Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1946	PP_1947	PP_1948	PP_1949	PP_1950
pH	Valerolactone (C) pH 6.5	-0.5	-0.7	-0.2	-0.2	-0.2
carbon source	4-Methyl-2-oxopentanoic (C)	-0.5	-0.7	-0.3	-0.2	+0.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3	-0.4	-0.3	-0.3	-0.2
nitrogen source	D-2-Aminobutyric (N)	-0.4	-0.6	+0.2	+0.3	-0.6
carbon source	L-Leucine (C)	+0.3	-0.6	-0.1	-0.2	-0.3
pH	pH 8	+0.4	+0.2	-0.4	-0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	-0.0	+0.3	+0.1	-0.2
nitrogen source	nitrate (N)	+0.2	-0.8	+0.1	+0.0	+0.1
nitrogen source	nitrate (N)	+0.1	+0.4	-0.1	-0.0	-0.6
pH	pH 5	+0.2	+0.5	-0.3	-0.2	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.4	+0.3	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.7	+0.0	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	+0.6	+0.0	-0.0	-0.8
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.3	-0.3	+0.1	+0.3	+0.3
mixed community control	Putida_ML5X alone	-0.2	-0.3	+0.2	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.2	-0.1	-0.5
pH	pH 9	+0.6	+0.3	-0.1	+0.0	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.2	-0.4	+0.2	+0.2	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	+0.3	+0.4	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.8	-0.0	-0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.6	+0.5	+0.1	-0.1	-0.1
phage	P. put South MOI 10	+0.1	+0.7	+0.2	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.3	+0.2	-0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	+0.7	+0.0	-0.1	+0.2
phage	P. putida compost MOI 0.1	+0.3	+0.2	+0.3	+0.3	+0.2
nitrogen source	2,6-diaminopimelic (N)	+0.4	+0.2	+0.2	+0.5	+0.7
phage	P. putida Sci small MOI 0.1	+0.4	+1.0	+0.2	+0.6	+0.4
phage	P. putida Sci small MOI 0.1	+0.9	+0.9	+0.5	+0.5	+0.8
phage	P. putida PUT 7 MOI 1	+0.7	+1.0	+0.9	+0.8	+0.7
phage	P. putida Missley MOI 0.1	+1.0	+1.4	+0.7	+1.0	+1.1