Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1907 and PP_1908 are separated by 6 nucleotidesPP_1908 and PP_1909 are separated by 209 nucleotidesPP_1909 and PP_1910 are separated by 60 nucleotidesPP_1910 and PP_1911 are separated by 13 nucleotides PP_1907: PP_1907 - Hydrolase, haloacid dehalogenase-like family, at 2,152,277 to 2,152,951 _1907 PP_1908: PP_1908 - putative Peptidase, at 2,152,958 to 2,153,947 _1908 PP_1909: PP_1909 - putative septum formation protein, at 2,154,157 to 2,154,771 _1909 PP_1910: PP_1910 - conserved protein of unknown function, at 2,154,832 to 2,155,359 _1910 PP_1911: PP_1911 - 50S ribosomal protein L32, at 2,155,373 to 2,155,555 _1911
Group Condition PP_1907 PP_1908 PP_1909 PP_1910 PP_1911
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -0.1 -1.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.2 -0.2 -2.0 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 -0.2 -1.1 N.D. N.D.
phage P. putida Sci Big MOI 0.1 -1.0 -0.4 -0.7 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 -0.2 -0.5 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 -1.4 N.D. N.D.
phage P. put South MOI 0.1 -0.1 +0.3 -1.6 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.9 +0.1 -0.6 N.D. N.D.
phage P. putida South MOI 0.1 +0.1 +0.2 -1.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 +0.3 -1.0 N.D. N.D.
phage P. put PUT 10 MOI 0.1 -0.2 +0.2 -1.1 N.D. N.D.
phage P. putida PUT10 MOI 1 +0.0 +0.2 -1.4 N.D. N.D.
phage P. put PUT 10 MOI 1 +0.1 +0.2 -1.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 -0.2 -1.5 N.D. N.D.
phage P. putida PUT10 MOI 0.1 +0.1 +0.4 -1.4 N.D. N.D.
phage P. put South MOI 0.1 +0.3 +0.3 -1.5 N.D. N.D.
phage P. put South MOI 1 +0.1 +0.3 -1.3 N.D. N.D.
phage P. putida PUT10 MOI 10 +0.4 +0.5 -1.6 N.D. N.D.
phage P. put PUT 10 MOI 10 +0.6 +0.5 -1.5 N.D. N.D.
phage P. put PUT 10 MOI 10 +0.7 +0.3 -1.5 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) -0.7 -0.2 +0.6 N.D. N.D.
phage P. putida PUT10 MOI 0.1 +0.1 +0.5 -1.0 N.D. N.D.
carbon source Delta-Dodecalactone (C) -0.8 +0.5 +0.5 N.D. N.D.
pH Growth at pH9 and (C) D-Glucose -0.4 -0.2 +1.0 N.D. N.D.
carbon source ferulate (C); with MOPS -0.4 +0.2 +1.1 N.D. N.D.
pH pH 7 +0.5 +0.3 +0.8 N.D. N.D.
pH pH 5 +0.8 +0.2 +0.6 N.D. N.D.
carbon source carbon source 4-vinylphenol 0.1 mM +0.6 +0.2 +1.0 N.D. N.D.
carbon source Delta-Nonalactone (C) +0.1 +0.9 +1.2 N.D. N.D.
carbon source ferulate (C); with MOPS +0.6 +0.5 +1.8 N.D. N.D.
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