Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1900 and PP_1901 are separated by 44 nucleotidesPP_1901 and PP_1902 overlap by 4 nucleotidesPP_1902 and PP_1903 overlap by 1 nucleotidesPP_1903 and PP_1904 overlap by 40 nucleotides PP_1900: PP_1900 - Tetraacyldisaccharide 4'-kinase, at 2,143,652 to 2,144,656 _1900 PP_1901: PP_1901 - conserved protein of unknown function, UPF0434 family, at 2,144,701 to 2,144,886 _1901 PP_1902: PP_1902 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,144,883 to 2,145,647 _1902 PP_1903: PP_1903 - putative phosphotyrosine-protein phosphatase, at 2,145,647 to 2,146,111 _1903 PP_1904: PP_1904 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,146,072 to 2,147,127 _1904
Group Condition PP_1900 PP_1901 PP_1902 PP_1903 PP_1904
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. N.D. -2.3 N.D.
nitrogen source Propiolactam (N) N.D. N.D. N.D. -1.5 N.D.
temperature shift Temperature shift 30_to_25 N.D. N.D. N.D. -1.4 N.D.
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant N.D. N.D. N.D. -1.2 N.D.
nitrogen source Propandiamine (N) N.D. N.D. N.D. -1.2 N.D.
pH Growth at pH7 and (C) Trisodium citrate N.D. N.D. N.D. -1.2 N.D.
nitrogen source NAG (N); with MOPS N.D. N.D. N.D. -1.1 N.D.
temperature shift Temperature shift 30_to_25; with MOPS N.D. N.D. N.D. -1.0 N.D.
carbon source Tween 20 (C) N.D. N.D. N.D. -1.0 N.D.
pH Growth at pH6 and (C) D-Glucose N.D. N.D. N.D. -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.0 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. N.D. N.D. -0.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. N.D. +1.0 N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM N.D. N.D. N.D. +1.0 N.D.
carbon source D-Glucose (C) with 20AA_mix_minus_Thr N.D. N.D. N.D. +1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. +1.0 N.D.
carbon source carbon source 4-vinylphenol 0.1 mM N.D. N.D. N.D. +1.0 N.D.
carbon source Valerolactone (C) N.D. N.D. N.D. +1.1 N.D.
carbon source D-Glucuronic gamma lactone (C) N.D. N.D. N.D. +1.1 N.D.
pH pH 5 N.D. N.D. N.D. +1.1 N.D.
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM N.D. N.D. N.D. +1.2 N.D.
pH pH 9 N.D. N.D. N.D. +1.2 N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. N.D. +1.2 N.D.
carbon source carbon source 3-O-methyl-glucose 10 mM N.D. N.D. N.D. +1.3 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. N.D. N.D. +1.4 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM N.D. N.D. N.D. +1.4 N.D.
carbon source carbon source Bisabolol 45 mM N.D. N.D. N.D. +1.4 N.D.
pH pH 7 N.D. N.D. N.D. +1.5 N.D.
carbon source carbon source 2-Deoxy-D-glucose 10 mM N.D. N.D. N.D. +1.6 N.D.
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