Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1897 and PP_1898 are separated by 71 nucleotidesPP_1898 and PP_1899 overlap by 4 nucleotidesPP_1899 and PP_1900 overlap by 4 nucleotidesPP_1900 and PP_1901 are separated by 44 nucleotides PP_1897: PP_1897 - DNA internalization-related competence protein ComEC/Rec2, at 2,140,265 to 2,142,478 _1897 PP_1898: PP_1898 - MotA/TolQ/ExbB proton channel family protein, at 2,142,550 to 2,143,224 _1898 PP_1899: PP_1899 - ExbD/TolR family protein, at 2,143,221 to 2,143,655 _1899 PP_1900: PP_1900 - Tetraacyldisaccharide 4'-kinase, at 2,143,652 to 2,144,656 _1900 PP_1901: PP_1901 - conserved protein of unknown function, UPF0434 family, at 2,144,701 to 2,144,886 _1901
Group Condition PP_1897 PP_1898 PP_1899 PP_1900 PP_1901
pH Growth at pH6 and (C) D-Glucose -0.2 -7.1 N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose -0.0 -7.2 N.D. N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS -0.0 -7.2 N.D. N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS +0.0 -7.1 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -6.7 N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose +0.0 -7.0 N.D. N.D. N.D.
carbon source D-Glucose (C); with MOPS +0.2 -7.1 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -6.7 N.D. N.D. N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.2 -6.7 N.D. N.D. N.D.
pH Growth at pH8 and (C) D-Glucose +0.2 -7.0 N.D. N.D. N.D.
pH Growth at pH7 and (C) Trisodium citrate +0.2 -6.8 N.D. N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.0 -6.4 N.D. N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS -0.5 -5.8 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -6.1 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -5.8 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.1 -6.1 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -5.8 N.D. N.D. N.D.
stress Growth with Chloride 500 mM; with MOPS +0.0 -5.8 N.D. N.D. N.D.
temperature Growth at 10C -0.0 -5.8 N.D. N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.4 -6.1 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 -5.5 N.D. N.D. N.D.
temperature Growth at 10C +0.1 -5.8 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.0 -5.7 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.0 -5.6 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 -5.4 N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose +0.1 -5.6 N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate +0.1 -5.6 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 -5.5 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -5.7 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 -5.4 N.D. N.D. N.D.
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