Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_1875 and PP_1876 are separated by 204 nucleotidesPP_1876 and PP_1877 are separated by 0 nucleotidesPP_1877 and PP_1878 are separated by 75 nucleotidesPP_1878 and PP_t20 are separated by 332 nucleotides PP_1875: PP_1875 - Sensor histidine kinase/response regulator, at 2,097,532 to 2,099,889 _1875 PP_1876: PP_1876 - putative ATP/GTP-binding protein of the AAA+ family, at 2,100,094 to 2,100,981 _1876 PP_1877: PP_1877 - free methionine-(R)-sulfoxide reductase, at 2,100,982 to 2,101,464 _1877 PP_1878: PP_1878 - conserved protein of unknown function, at 2,101,540 to 2,102,307 _1878 PP_t20: PP_t20 - tRNA-Glu, at 2,102,640 to 2,102,715 _t20
Group Condition PP_1875 PP_1876 PP_1877 PP_1878 PP_t20
phage P. putida Sci small MOI 0.1 -0.3 -0.7 -0.3 -1.3 N.D.
temperature shift Temperature shift 30_to_25 +0.1 -0.8 -0.3 -1.6 N.D.
carbon source ferulate (C); with MOPS +0.2 -2.0 -0.1 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -1.4 +0.0 -0.8 N.D.
stress Growth with Chloride 500 mM; with MOPS -0.2 -1.2 -0.1 -0.7 N.D.
carbon source L-Phenylalanine 5 mM (C) -0.1 -0.4 -0.1 -1.4 N.D.
stress Growth with Chloride 500 mM -0.1 -1.2 +0.0 -0.7 N.D.
temperature shift Temperature shift 30_to_25; with MOPS +0.2 -0.4 -0.6 -1.1 N.D.
nitrogen source Propandiamine (N) +0.0 -1.6 -0.2 -0.2 N.D.
phage moi 100 Time6-phageFRS -0.1 -0.6 -0.2 -1.1 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.0 -0.7 -0.2 -1.0 N.D.
phage P. putida Sci Big MOI 0.1 -0.3 -1.5 +0.1 -0.1 N.D.
nitrogen source nitrate (N) +0.2 -1.3 +0.0 -0.7 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.0 -1.4 -0.5 +0.2 N.D.
pH Growth at pH8 and (C) D-Glucose +0.1 -1.6 +0.1 -0.2 N.D.
nitrogen source 2,6-diaminopimelic (N) -0.8 -0.7 +0.5 -0.5 N.D.
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.1 -1.5 +0.1 -0.3 N.D.
nitrogen source NAG (N); with MOPS +0.1 -0.7 +0.3 -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.0 -1.5 +0.3 +0.1 N.D.
carbon source 2,3-Butanediol (C) +0.2 -1.4 +0.1 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 +0.4 +0.2 -0.9 N.D.
carbon source Myristic (C) +0.4 -1.2 +0.4 +0.2 N.D.
carbon source Delta-Decalactone (C) +1.6 -1.0 -0.2 +0.0 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.2 +0.1 -0.6 N.D.
carbon source Delta-Undecalactone (C) +1.5 -0.4 +0.0 -0.1 N.D.
carbon source Delta-Undecalactone (C) +1.5 -0.3 +0.1 -0.1 N.D.
pH pH 5 +0.9 +0.3 -0.2 +0.5 N.D.
stress Isobutyl alcohol 0.6 vol% +0.1 +1.1 +0.2 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.5 +0.1 +0.4 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +2.5 -0.1 -0.2 N.D.
remove
PP_1875
plot		 remove
PP_1876
plot		 remove
PP_1877		 remove
PP_1878
plot		 remove
PP_t20
plot