Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1867 and PP_1868 are separated by 351 nucleotidesPP_1868 and PP_1869 are separated by 90 nucleotidesPP_1869 and PP_1870 are separated by 74 nucleotidesPP_1870 and PP_1871 are separated by 97 nucleotides PP_1867: PP_1867 - conserved protein of unknown function, at 2,089,568 to 2,090,323 _1867 PP_1868: PP_1868 - ATP-dependent DEAD-box RNA helicase DeaD, at 2,090,675 to 2,092,354 _1868 PP_1869: PP_1869 - 4,5-DOPA-dioxygenase, at 2,092,445 to 2,093,239 _1869 PP_1870: PP_1870 - putative thiopurine S-methyltransferase, at 2,093,314 to 2,093,964 _1870 PP_1871: PP_1871 - Protease HtpX, at 2,094,062 to 2,094,949 _1871
Group Condition PP_1867 PP_1868 PP_1869 PP_1870 PP_1871
phage P. put South MOI 1 +0.1 N.D. -0.1 -0.1 -5.3
phage P. put PUT 10 MOI 10 +0.0 N.D. +0.1 -0.4 -4.9
phage P. putida PUT10 MOI 10 -0.0 N.D. +0.2 -0.4 -4.8
phage P. put PUT 10 MOI 0.1 +0.1 N.D. -0.1 -0.4 -4.4
phage P. putida South MOI 0.1 +0.1 N.D. +0.2 -0.4 -4.4
phage P. put PUT 10 MOI 0.1 -0.1 N.D. +0.0 -0.2 -4.1
phage P. putida PUT10 MOI 10 +0.2 N.D. +0.3 -0.1 -4.6
phage P. put South MOI 1 +0.3 N.D. +0.3 -0.5 -4.1
phage P. putida PUT10 MOI 0.1 +0.0 N.D. +0.0 -0.1 -3.9
phage P. putida South MOI 10 -0.6 N.D. +0.0 -0.5 -2.7
phage P. putida South MOI 0.1 +0.1 N.D. +0.2 -0.4 -3.6
phage P. putida PUT10 MOI 0.1 +0.2 N.D. +0.0 -0.1 -3.9
phage P. putida South MOI 1 +0.5 N.D. +0.0 -0.0 -4.2
phage P. put PUT 10 MOI 10 +0.2 N.D. +0.3 -0.2 -3.8
phage P. put PUT 10 MOI 1 +0.3 N.D. -0.1 -0.2 -3.2
phage P. put South MOI 0.1 +0.5 N.D. +0.0 -0.2 -3.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 N.D. +0.0 -0.3 -2.1
phage P. put PUT 10 MOI 1 +0.2 N.D. +0.1 -0.2 -3.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 N.D. +0.1 -0.4 -2.2
phage P. putida PUT10 MOI 1 +0.1 N.D. +0.3 -0.3 -2.7
phage PUT8 MOI 0.1 +0.2 N.D. -0.2 +0.3 -2.9
pH Growth at pH6 and (C) D-Glucose -1.1 N.D. -0.1 -0.4 -0.9
phage PUT8 MOI 0.1 -0.3 N.D. -0.0 +0.2 -2.3
phage P. putida PUT10 MOI 1 +0.4 N.D. +0.2 -0.4 -2.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.0 N.D. +0.1 -0.7 -1.8
phage P. put South MOI 0.1 +0.3 N.D. +0.1 -0.1 -2.3
phage PUT 8 MOI 1 -0.4 N.D. +0.1 +0.2 -1.9
phage P. putida South MOI 10 +0.5 N.D. +0.0 -0.1 -2.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. +0.4 +0.4 -1.1
nitrogen source D-2-Aminobutyric (N) +0.9 N.D. -0.3 -0.3 -0.8
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