Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_1860 and PP_1861 are separated by 58 nucleotidesPP_1861 and PP_1862 are separated by 113 nucleotidesPP_1862 and PP_1863 are separated by 28 nucleotidesPP_1863 and PP_1864 are separated by 162 nucleotides PP_1860: PP_1860 - Organic hydroperoxide resistance transcriptional regulator, at 2,081,766 to 2,082,221 _1860 PP_1861: PP_1861 - Transcriptional regulator, LysR family, at 2,082,280 to 2,083,233 _1861 PP_1862: PP_1862 - conserved membrane protein of unknown function, at 2,083,347 to 2,084,096 _1862 PP_1863: PP_1863 - Transcriptional regulator, LysR family, at 2,084,125 to 2,084,976 _1863 PP_1864: PP_1864 - conserved protein of unknown function, at 2,085,139 to 2,085,291 _1864
Group Condition PP_1860 PP_1861 PP_1862 PP_1863 PP_1864
carbon source Valerolactone (C) -1.3 -0.3 -3.8 -0.1 +0.0
phage P. putida Sci small MOI 0.1 -1.0 -0.3 -2.2 +0.4 -1.1
nitrogen source 2,6-diaminopimelic (N) +0.0 -0.5 -1.6 -0.1 -1.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.7 -0.0 -0.3 +0.4 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.6 -0.4 -1.1 +0.0 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.6 +0.2 -0.6 +0.3 -1.1
carbon source 4-Hydroxyvalerate (C) (40mM) -1.8 -0.1 -0.4 -0.2 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.6 -0.4 -0.1 +0.1 -0.4
pH Valerolactone (C) pH 6.5 -1.8 -0.1 -1.2 +0.3 -0.6
carbon source Delta-Nonalactone (C) -1.9 -0.4 -0.4 -0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.0 -0.1 -0.8 +0.2 -0.3
pH Valerolactone (C) pH 6.5 -1.0 -0.2 +0.3 +0.1 -2.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.1 -1.1 +0.1 -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.6 -0.1 -0.1 +0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.2 +0.6 +0.0 -0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.1 +0.5 -0.8 +0.2 -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -0.1 -0.6 +0.4 -0.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.0 +0.3 -0.6 +0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.9 -0.2 -0.4 +0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.6 -0.1 -0.7 -0.3 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.2 +0.3 -0.3 +0.2 -0.3
nitrogen source D-2-Aminobutyric (N) -0.4 +0.2 -0.6 +0.4 -1.7
pH Growth at pH6 and (C) Trisodium citrate -0.2 +0.0 +0.8 +0.1 -2.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.2 +0.4 -0.2 +0.3 -0.0
temperature Growth at 25C; with MOPS -0.7 -0.0 +0.8 -0.4 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.0 +0.6 +0.3 +0.2 -1.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 -0.1 -0.9 -0.0 +2.2
carbon source ferulate (C); with MOPS -2.0 +0.2 +0.1 -0.1 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 +0.3 +0.9 -0.4 +0.2
nitrogen source nitrate (N) -0.4 +0.5 +1.2 -0.4 +0.8
remove
PP_1860
plot		 remove
PP_1861
plot		 remove
PP_1862		 remove
PP_1863
plot		 remove
PP_1864
plot