Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1842 and PP_1843 are separated by 40 nucleotidesPP_1843 and PP_1844 are separated by 68 nucleotidesPP_1844 and PP_1845 are separated by 120 nucleotidesPP_1845 and PP_t19 are separated by 198 nucleotides PP_1842: PP_1842 - Glutamine amidotransferase, class I, at 2,065,527 to 2,066,261 _1842 PP_1843: PP_1843 - Mg2+/Co2+ transporter, at 2,066,302 to 2,067,273 _1843 PP_1844: PP_1844 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,067,342 to 2,068,055 _1844 PP_1845: PP_1845 - Enoyl-CoA hydratase/isomerase family protein, at 2,068,176 to 2,068,865 _1845 PP_t19: PP_t19 - tRNA-Ser, at 2,069,064 to 2,069,153 _t19
Group Condition PP_1842 PP_1843 PP_1844 PP_1845 PP_t19
nitrogen source Propandiamine (N) -5.0 -1.0 -1.3 -0.4 N.D.
nitrogen source Propandiamine (N) -4.2 +0.1 -0.3 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.0 -2.7 -1.1 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 -2.0 -0.6 -0.6 N.D.
nitrogen source nitrogen source nitrite 1mM -0.4 -0.3 -0.3 -2.0 N.D.
carbon source Oleic (C) +0.1 +0.1 +0.3 -3.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 -2.1 -0.2 -0.2 N.D.
pH Growth at pH7 and (C) D-Glucose -0.9 -0.3 -0.2 -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.2 -0.5 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -0.1 -0.2 -1.0 N.D.
nitrogen source DL-2-Aminobutyric (N) -1.2 +0.0 -0.6 -0.5 N.D.
carbon source carbon source D-Glucose 55.5 mM -1.2 +0.2 +0.4 -1.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.5 -0.5 -0.4 N.D.
phage P. putida Missley MOI 0.1 -0.6 +0.0 -0.5 -0.9 N.D.
carbon source Oleic (C) -0.0 +0.2 +0.1 -2.1 N.D.
pH pH 6 -0.8 +0.3 +0.1 -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.2 +0.2 -1.8 N.D.
nitrogen source 2,6-diaminopimelic (N) -0.7 +0.3 -0.2 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.2 +0.0 -1.5 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.3 -0.1 +0.7 -1.4 N.D.
carbon source ferulate (C); with MOPS -1.1 -0.5 +0.3 +0.3 N.D.
phage P. putida Sci Big MOI 0.1 -1.3 +0.3 +0.3 -0.1 N.D.
pH pH 5 -0.5 +0.6 +0.2 -1.0 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 +1.3 -0.2 -0.5 -0.2 N.D.
pH Growth at pH7 and (C) Trisodium citrate -1.1 +0.4 +0.4 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.2 +0.8 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.6 +0.6 +1.4 N.D.
phage PUT 8 MOI 1 +0.5 -0.1 +1.1 +0.5 N.D.
phage P. put South MOI 1 +0.5 +0.2 +0.7 +0.9 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 +0.2 +0.6 +1.6 N.D.
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