Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1832	PP_1833	PP_1834	PP_1835	PP_1836
pH	Growth at pH6 and (C) D-Glucose	-0.8	-0.1	-0.9	+0.4	-3.8
nitrogen source	NAG (N); with MOPS	-0.1	+0.3	-0.9	+0.0	-2.9
nitrogen source	2,6-diaminopimelic (N)	-1.1	-0.5	-0.9	-0.3	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.0	-1.7	-0.4	-0.4	-0.7
carbon source	ferulate (C); with MOPS	-0.8	-0.0	+0.4	-1.0	-1.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	+0.0	-2.0	-0.5	-0.1
phage	P. putida PUT 7 MOI 1	-1.1	-0.8	+0.5	-0.4	-0.6
nitrogen source	nitrogen source nitrate 5mM	-0.5	-0.2	-0.3	-0.1	-1.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.0	-0.8	-0.4	+0.2	-1.1
phage	P. putida Sci Big MOI 0.1	-0.7	-0.7	+0.5	-0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-1.2	-0.5	-0.4	-0.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4	+0.3	-0.8	+0.3	-0.9
phage	P. putida Sci small MOI 0.1	-0.0	+0.7	-0.6	-0.1	-1.4
phage	P. put South MOI 10	+0.3	+0.0	-0.8	-1.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.0	+0.5	-0.3	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	+0.9	-1.0	-0.7	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6	+0.1	+0.6	+0.0	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1	-0.1	-0.7	+0.4	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	+0.3	+0.2	+0.1	-1.7
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.2	+0.4	+0.5	+0.0	-1.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.3	+0.8	-1.5	-0.4	+1.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.3	+0.4	-0.6	+0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.2	+1.2	+0.1	-0.7
nitrogen source	NAG (N); with MOPS	+0.0	+0.4	+1.1	-0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	+0.5	-0.0	+1.7
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.1	+0.8	+1.0	+0.2	-0.7
pH	pH 5	-0.3	+0.7	+0.5	-0.0	+0.8
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.1	+0.6	+0.8	-0.2	+0.7
carbon source	Nonanoic (C)	+0.2	-0.3	+1.1	+0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.5	+1.3	-0.4	+1.2