Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1763 and PP_1764 are separated by 157 nucleotidesPP_1764 and PP_1765 are separated by 2 nucleotidesPP_1765 and PP_1766 are separated by 110 nucleotidesPP_1766 and PP_1767 are separated by 365 nucleotides PP_1763: PP_1763 - putative oxidoreductase, at 1,967,249 to 1,967,989 _1763 PP_1764: PP_1764 - Phosphoglycolate phosphatase 2, at 1,968,147 to 1,968,818 _1764 PP_1765: PP_1765 - Ubiquinone biosynthesis O-methyltransferase, at 1,968,821 to 1,969,519 _1765 PP_1766: PP_1766 - methylthioribose-1-phosphate isomerase, at 1,969,630 to 1,970,706 _1766 PP_1767: PP_1767 - DNA gyrase, subunit A, at 1,971,072 to 1,973,843 _1767
Group Condition PP_1763 PP_1764 PP_1765 PP_1766 PP_1767
carbon source 3-methyl-1-butanol 0.1 vol% (C) -4.3 -5.7 N.D. +0.0 N.D.
micoeukaryotes C.elegans, mixed culture-1 -3.4 -3.8 N.D. -0.2 N.D.
phage PUT8 MOI 0.1 -1.6 -5.4 N.D. -0.3 N.D.
phage PUT8 MOI 0.1 -0.7 -5.5 N.D. -0.8 N.D.
phage PUT8 MOI 10 -0.6 -5.8 N.D. -0.5 N.D.
phage PUT8 MOI 10 -0.6 -5.2 N.D. -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -4.1 -2.2 N.D. -0.1 N.D.
phage PUT 8 MOI 1 -0.9 -5.5 N.D. +0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.1 -1.5 N.D. -0.5 N.D.
carbon source Glycerol (C) -0.0 -6.3 N.D. +0.3 N.D.
phage P. put South MOI 1 -1.5 -4.1 N.D. -0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -3.3 -2.0 N.D. -0.4 N.D.
phage P. putida PUT10 MOI 0.1 -1.2 -4.3 N.D. -0.1 N.D.
phage P. putida South MOI 0.1 -1.0 -4.5 N.D. +0.1 N.D.
carbon source acetate (C) -2.4 -2.9 N.D. +0.0 N.D.
phage P. putida PUT10 MOI 10 -0.4 -4.4 N.D. -0.3 N.D.
phage P. put PUT 10 MOI 1 -0.6 -4.0 N.D. -0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.3 -2.0 N.D. +0.2 N.D.
phage P. put South MOI 0.1 -0.8 -4.0 N.D. -0.2 N.D.
carbon source Glycerol (C) +0.1 -5.1 N.D. +0.0 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 -4.1 N.D. -0.3 N.D.
phage P. put South MOI 10 -0.7 -4.2 N.D. -0.1 N.D.
phage P. putida South MOI 10 -0.8 -4.1 N.D. +0.1 N.D.
phage P. putida PUT10 MOI 1 -0.4 -4.3 N.D. -0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 -1.5 -3.6 N.D. +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.0 -2.6 N.D. +0.4 N.D.
phage P. putida PUT10 MOI 1 +0.2 -4.5 N.D. +0.2 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.4 -3.0 N.D. +0.4 N.D.
pH Growth at pH6 and (C) D-Glucose +0.6 -4.1 N.D. +0.1 N.D.
carbon source Trisodium citrate (C) +0.9 -4.3 N.D. +0.2 N.D.
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