Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1755 and PP_1756 are separated by 154 nucleotidesPP_1756 and PP_1757 are separated by 10 nucleotidesPP_1757 and PP_1758 are separated by 127 nucleotidesPP_1758 and PP_1759 are separated by 36 nucleotides PP_1755: PP_1755 - fumarate hydratase (class 2), at 1,957,669 to 1,959,063 _1755 PP_1756: PP_1756 - conserved exported protein of unknown function, at 1,959,218 to 1,959,742 _1756 PP_1757: PP_1757 - DNA-binding transcriptional dual regulator, at 1,959,753 to 1,960,049 _1757 PP_1758: PP_1758 - putative sulfurtransferase containing rhodanese-like domain, at 1,960,177 to 1,961,109 _1758 PP_1759: PP_1759 - conserved exported protein of unknown function, at 1,961,146 to 1,961,745 _1759
Group Condition PP_1755 PP_1756 PP_1757 PP_1758 PP_1759
nitrogen source Propandiamine (N) +0.1 -0.9 -0.7 -2.9 -0.2
nitrogen source Propandiamine (N) -0.2 -0.5 -0.2 -3.0 -0.2
carbon source ferulate (C); with MOPS -0.7 -0.4 -0.7 -0.7 -1.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 +0.2 -0.4 -1.7 -1.3
carbon source ferulate (C); with MOPS +0.3 -0.9 -1.6 -0.8 +0.1
pH Growth at pH9 and (C) Trisodium citrate +0.2 -1.1 -0.1 -0.5 -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -1.3 -1.1 -0.8 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.7 -0.8 -0.2 -0.5
carbon source ferulate (C); with MOPS -0.3 -0.8 -1.0 -0.4 -0.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -0.7 -0.5 -0.3 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.5 -0.4 -0.6 -0.6
stress R2A with Fusaric 240 ug/mL -0.3 -0.7 -1.3 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -0.5 -0.5 -0.8 +0.3
phage P. putida Missley MOI 0.1 -0.4 -0.1 -0.8 -1.1 +0.1
carbon source Valerolactone (C) +0.7 -0.7 -0.8 -0.2 -0.9
nitrogen source NAG (N); with MOPS +0.3 -1.3 -0.4 -0.3 +0.2
nitrogen source 2,6-diaminopimelic (N) +0.6 -0.8 -0.7 +0.2 -0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -0.1 -0.2 -0.7 +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.4 -0.6 -0.6 -0.2
nitrogen source nitrate (N) +0.3 -1.7 -0.0 -0.0 +0.6
carbon source carbon source 4-vinylphenol 0.1 mM +0.5 +0.3 -1.1 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.3 -1.2 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.4 -0.6 -0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.5 -0.9 +0.2 -0.7
pH pH 8 +0.7 +0.3 -0.4 -0.6 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.1 +2.2 -0.7 -0.7
nitrogen source D-2-Aminobutyric (N) -0.1 +0.4 -1.0 +1.1 +1.1
phage P. put PUT 10 MOI 10 +0.3 +0.6 +0.7 -0.6 +0.5
nitrogen source DL-2-Aminobutyric (N) -0.0 +0.3 +0.1 +1.9 +0.9
nitrogen source DL-2-Aminobutyric (N) +0.1 +0.0 +0.7 +1.8 +0.9
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