Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1743	PP_1744	PP_1745	PP_1746	PP_1747
carbon source	Acetate Carbon Source (5mM)	-2.1	-0.3	-0.6	N.D.	N.D.
phage	P. putida Sci small MOI 0.1	+0.0	+0.3	-2.0	N.D.	N.D.
carbon source	ferulate (C); with MOPS	-0.6	-0.3	-0.7	N.D.	N.D.
carbon source	Acetate Carbon Source (20mM)	-0.9	-0.6	-0.0	N.D.	N.D.
carbon source	pyruvate (C)	-1.2	-0.1	-0.2	N.D.	N.D.
carbon source	Delta-Nonalactone (C)	-0.9	+0.1	-0.5	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-0.6	-0.6	N.D.	N.D.
carbon source	Acetate Carbon Source (20mM)	-1.3	-0.0	+0.1	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-1.3	-0.2	N.D.	N.D.
carbon source	Acetate Carbon Source (5mM)	-1.5	+0.1	+0.4	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-1.4	+0.1	N.D.	N.D.
temperature	Growth at 30C; with MOPS	-0.3	+0.2	-0.7	N.D.	N.D.
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.9	+0.4	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-1.0	+0.4	N.D.	N.D.
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2	-0.9	+0.1	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	-0.7	+0.3	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.2	-0.8	N.D.	N.D.
carbon source	ferulate (C); with MOPS	-0.1	-0.7	+0.5	N.D.	N.D.
pH	Growth at pH6 and (C) D-Glucose	+0.2	+0.3	-0.8	N.D.	N.D.
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	+0.3	-0.8	+0.2	N.D.	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	+0.5	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.9	-0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.6	+0.7	N.D.	N.D.
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.1	+0.7	-0.3	N.D.	N.D.
carbon source	D-Glucose (C)	+0.2	-0.4	+0.5	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	+0.8	-0.6	N.D.	N.D.
carbon source	Delta-Decalactone (C)	-0.3	+0.2	+0.7	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	+0.6	+0.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.6	+0.7	N.D.	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	+0.7	+0.7	N.D.	N.D.