Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1737	PP_1738	PP_1739	PP_1740	PP_1741
phage	P. putida Sci small MOI 0.1	-0.1	-0.3	-7.3	+0.1	-0.2
stress	R2A with Fusaric 480 ug/mL	-2.4	-2.1	-0.1	+0.2	-0.1
stress	R2A with Fusaric 480 ug/mL	-1.9	-2.1	+0.2	+0.0	-0.2
stress	R2A with Fusaric 480 ug/mL	-1.7	-2.1	+0.1	-0.0	-0.1
no stress control	Growth with no stress	-1.4	-1.3	-1.1	+0.0	+0.2
stress	R2A with Fusaric 480 ug/mL	-1.5	-2.1	+0.1	-0.0	+0.2
stress	R2A with Fusaric 480 ug/mL	-1.6	-2.1	+0.3	+0.0	+0.1
stress	R2A with Fusaric 480 ug/mL	-1.7	-2.0	+0.5	-0.1	+0.1
phage	P. putida South MOI 10	-0.1	+0.0	-1.9	-0.4	-0.2
time series	Timeseries; NC condition; Bioreplicate 1; Time 3hrs; Measurement	-1.1	-1.2	-0.0	-0.0	-0.0
carbon source	Delta-Undecalactone (C)	-1.0	-0.9	-0.2	-0.1	-0.2
carbon source	ferulate (C); with MOPS	-0.4	-0.3	-1.6	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.6	-0.6	-0.7	-0.1	-0.3
carbon source	Delta-Decalactone (C)	-1.1	-0.5	-0.6	+0.0	+0.1
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.6	-0.8	-0.3	-0.3	+0.0
carbon source	acetate (C)	-0.2	-0.1	-1.7	-0.3	+0.4
nitrogen source	NAG (N); with MOPS	-0.1	-0.4	-1.4	-0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.5	-1.2	+0.6	+0.2	+0.4
nitrogen source	Ammonium chloride (N)	-0.4	-0.3	-1.0	+0.2	+0.1
nitrogen source	NAG (N)	-0.7	-0.3	-0.9	+0.2	+0.3
temperature	Growth at 25C	-0.5	-0.5	-0.8	+0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.8	-0.7	+0.4	+0.2	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7	-0.4	+0.6	+0.2	-0.3
carbon source	ferulate (C); with MOPS	+0.4	-0.5	-0.9	+0.2	+0.1
pH	pH 9	+0.4	+0.6	-1.5	-0.0	+0.3
pH	pH 4	+0.3	+0.4	-0.7	+0.2	+0.4
pH	pH 5	+0.6	+1.0	-0.8	+0.1	-0.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+1.0	+1.1	-0.3	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	+1.6	-0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	+0.3	+1.7	+0.0	+0.1