Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1719 and PP_1720 are separated by 106 nucleotidesPP_1720 and PP_1721 are separated by 60 nucleotidesPP_1721 and PP_1722 are separated by 14 nucleotidesPP_1722 and PP_1723 are separated by 1 nucleotides PP_1719: PP_1719 - Tail-specific protease prc, at 1,918,342 to 1,920,456 _1719 PP_1720: PP_1720 - Alcohol dehydrogenase, zinc-containing, at 1,920,563 to 1,921,525 _1720 PP_1721: PP_1721 - putative phosphoserine phosphatase, at 1,921,586 to 1,922,239 _1721 PP_1722: PP_1722 - ABC transporter, ATP-binding protein, at 1,922,254 to 1,923,243 _1722 PP_1723: PP_1723 - putative 2-aminoethylphosphonate transport system permease, at 1,923,245 to 1,924,039 _1723
Group Condition PP_1719 PP_1720 PP_1721 PP_1722 PP_1723
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -4.1 +0.1 -0.1 -0.2 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.0 +0.0 +0.0 -0.5 -0.2
carbon source ferulate (C); with MOPS -2.6 -0.1 -0.1 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -3.5 +0.3 +0.1 +0.1 -0.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.7 -0.2 -0.2 -0.2 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 -0.2 +0.5 +0.1 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.7 -0.3 +0.3 +0.2 -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.2 +0.3 -0.4 +0.2 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -0.3 +0.1 -0.3 -0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 -2.3 -0.1 +0.1 -0.4 +0.1
micoeukaryotes C.elegans, mixed culture-1 -1.7 -0.2 -0.2 -0.3 -0.0
stress Geraniol 1 vol% -2.4 +0.2 -0.2 +0.0 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.7 +0.2 -0.3 -0.5 +0.1
carbon source ferulate (C); with MOPS -2.1 -0.2 +0.1 -0.6 +0.6
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.6 -0.2 +0.1 +0.4 +0.1
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) -2.7 +0.2 -0.1 +0.3 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.5 -0.1 +0.0 +0.4 +0.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 -2.8 -0.3 +0.5 +0.1 +0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.6 -0.0 +0.3 +0.1 +0.2
dilutelb LB 0.1x with 55.5 mM D-Glucose -1.6 +0.2 +0.1 -0.2 -0.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) -2.7 +0.2 +0.4 +0.2 +0.1
carbon source ferulate (C); with MOPS -2.5 +0.1 +0.4 +0.1 +0.2
phage P. putida Missley MOI 0.1 -0.1 -0.5 -0.5 +0.4 -0.8
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) -2.0 +0.1 +0.1 +0.4 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.3 +0.1 +0.3 +0.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.3 +0.2 +0.1 +0.5 +0.2
no stress control Growth with no stress +1.6 +0.1 +0.3 -0.5 +0.3
carbon source 1,3-Butandiol (C) +2.6 +0.0 -0.4 -0.3 -0.0
no stress control Growth with no stress +2.0 +0.2 -0.3 -0.3 +0.3
temperature Growth at 25C +1.7 +0.1 -0.3 +0.2 +0.6
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