Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_1688	PP_1689	PP_1690	PP_1691	PP_1692
phage	P. putida Sci small MOI 0.1	-0.1	-0.2	-1.2	-4.8	-1.0
nitrogen source	NAG (N); with MOPS	+0.1	-0.0	-1.1	-3.0	-0.2
nitrogen source	nitrite (N)	+0.4	-0.1	+0.3	+0.2	-3.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	-0.4	+0.2	-0.9	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.0	-0.1	-0.5	-1.5	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.1	-0.4	-0.6	-1.2	-0.4
carbon source	Lauric (C)	+0.1	-1.7	+0.2	-0.5	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.3	-0.7	-1.9	-0.0
pH	Growth at pH7 and (C) Trisodium citrate	-0.0	-0.3	-0.1	+1.0	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.1	-0.2	-1.3	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8	+0.2	+0.8	-1.5	-0.8
carbon source	Crotonic (C)	-0.4	+0.0	+0.3	-0.6	-1.3
carbon source	ferulate (C); with MOPS	-0.0	-0.2	+0.4	-0.3	-1.6
carbon source	Lignin Monomers (C)	-0.1	-2.3	+0.2	+0.3	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3	+0.0	+0.4	-1.2	-1.2
carbon source	ferulate (C); with MOPS	+0.2	-1.3	-0.7	+0.0	+0.3
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	+0.3	+0.2	-0.7	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-0.0	-1.9	+0.6
carbon source	Tween 20 (C)	+0.3	-0.5	+0.3	+0.1	-1.4
nitrogen source	Propandiamine (N)	-0.2	-1.1	-0.7	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	+0.1	+0.2	-1.8	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.1	+0.2	+0.6	+0.1	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.0	-1.1	-0.5	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.0	-0.3	+0.3	+1.0	-1.1
nitrogen source	Ammonium chloride (N)	+0.1	-0.1	-1.4	+0.7	+0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.4	-0.0	+0.7	+1.2	-0.9
carbon source	Myristic (C)	+0.4	-1.5	+1.2	+0.5	+0.2
phage	P. putida South MOI 10	-0.0	+0.4	+0.4	-1.1	+1.1
temperature shift	Temperature shift 30_to_4; with MOPS	-0.1	+0.1	+0.6	+0.9	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.2	+0.0	+2.0	+0.8