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Fitness for 5 genes in
Pseudomonas putida KT2440
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500 nt
PP_1675 and PP_1676 overlap by 8 nucleotides
PP_1676 and PP_1677 overlap by 4 nucleotides
PP_1677 and PP_1678 are separated by 1 nucleotides
PP_1678 and PP_1679 overlap by 4 nucleotides
PP_1675: PP_1675 - Subunit of adenosylcobinamide-phosphate synthase beta component, at 1,869,811 to 1,870,734
_1675
PP_1676: PP_1676 - subunit of adenosylcobinamide-phosphate synthase beta component, at 1,870,727 to 1,871,719
_1676
PP_1677: PP_1677 - Adenosyl-cobyric acid synthase, at 1,871,716 to 1,873,170
_1677
PP_1678: PP_1678 - bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase, at 1,873,172 to 1,873,693
_1678
PP_1679: PP_1679 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,873,690 to 1,874,745
_1679
Group
Condition
PP
_1675
PP
_1676
PP
_1677
PP
_1678
PP
_1679
nitrogen source
Ethanolamine (N)
-3.3
-2.3
-4.4
-3.3
-2.5
pH
Growth at pH6 and (C) Trisodium citrate
-1.4
-1.5
-2.0
-3.1
-6.8
nitrogen source
Ethanolamine (N)
-3.0
-2.1
-2.3
-2.8
-3.6
carbon source
3-methyl-1-butanol 0.1 vol% (C)
-2.8
-2.0
-2.6
-2.7
-3.1
carbon source
4-Methyl-2-oxopentanoic (C)
-2.3
-2.4
-2.4
-2.2
-2.9
nitrogen source
nitrite (N)
-1.8
-1.8
-2.2
-1.7
-3.7
temperature shift
Temperature shift 30_to_25; with MOPS
-2.2
-1.0
-2.6
-2.6
-2.8
temperature shift
Temperature shift 30_to_25; with MOPS
-1.5
-1.5
-1.1
-2.9
-4.1
carbon source
3-methyl-1-butanol (C)
-2.0
-2.1
-2.5
-2.3
-1.9
carbon source
propionate (C)
-2.3
-2.6
-1.9
-2.8
-1.1
nitrogen source
L-Leucine (N)
-2.0
-2.0
-1.8
-2.6
-2.1
carbon source
Hydroxy-L-Proline (C)
-1.9
-2.1
-2.5
-2.0
-2.0
carbon source
acetate (C)
-2.0
-3.2
-1.6
-1.2
-1.8
carbon source
4-Methyl-2-oxopentanoic (C)
-2.6
-1.8
-1.3
-2.2
-1.4
carbon source
butyrate (C)
-1.9
-2.0
-1.6
-2.5
-1.3
pH
Growth at pH6 and (C) D-Glucose
-1.4
-0.8
-1.8
-1.6
-3.5
carbon source
Hydroxy-L-Proline (C)
-1.7
-1.9
-1.3
-1.4
-2.5
temperature shift
Temperature shift 10_to_34
-1.6
-1.7
-1.9
-1.1
-2.4
carbon source
Trisodium citrate (C)
-1.9
-0.4
-0.1
-0.6
-5.8
carbon source
Beta-alanine (C)
-1.2
-1.1
-1.2
-2.5
-2.6
nitrogen source
Propandiamine (N)
-1.7
-0.9
-1.5
-1.6
-2.9
carbon source
1,4-Butanediol (C)
-1.6
-1.4
-1.8
-2.2
-1.6
temperature shift
Temperature shift 10_to_34
-1.7
-1.1
-1.3
-1.7
-2.8
carbon source
L-Lysine (C)
-1.4
-1.4
-2.0
-2.1
-1.6
temperature shift
Temperature shift 30_to_25
-1.0
-2.4
-1.7
-1.8
-1.5
temperature
Growth at 30C; with MOPS
-0.5
-1.4
-1.8
-0.4
-4.1
temperature shift
Temperature shift 30_to_25; with MOPS
-1.5
-1.5
-2.2
-1.8
-1.4
pH
Growth at pH9 and (C) D-Glucose
-1.8
-1.1
-1.2
-2.5
-1.5
carbon source
1,4-Butanediol (C)
-1.6
-1.2
-1.7
-2.0
-1.4
carbon source
Myristic (C)
-1.4
-0.8
-2.4
-1.0
-2.2
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