Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1642 and PP_1643 are separated by 103 nucleotidesPP_1643 and PP_1644 overlap by 8 nucleotidesPP_1644 and PP_1645 overlap by 4 nucleotidesPP_1645 and PP_1646 are separated by 85 nucleotides PP_1642: PP_1642 - conserved protein of unknown function, at 1,837,382 to 1,838,053 _1642 PP_1643: PP_1643 - conserved membrane protein of unknown function, at 1,838,157 to 1,838,570 _1643 PP_1644: PP_1644 - NAD(P)H dehydrogenase (quinone), at 1,838,563 to 1,839,168 _1644 PP_1645: PP_1645 - putative enzyme, at 1,839,165 to 1,839,518 _1645 PP_1646: PP_1646 - putative Thioredoxin, at 1,839,604 to 1,840,068 _1646
Group Condition PP_1642 PP_1643 PP_1644 PP_1645 PP_1646
stress Geraniol 1 vol% N.D. -1.4 -1.4 -1.0 +0.1
carbon source D-Glucose (C); with MOPS N.D. -0.1 -2.4 +0.2 -0.6
phage P. putida Sci Big MOI 0.1 N.D. -0.3 -1.5 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.0 -0.1 -0.5 -1.8
carbon source L-Leucine (C) N.D. +0.1 -1.5 -0.8 +0.0
carbon source 3-Hydroxydecanoic (C) N.D. -0.3 -1.2 -0.0 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -0.5 -0.4 -1.0
carbon source carbon source 4-vinylphenol 0.1 mM N.D. -0.6 -0.9 +0.2 -0.7
stress 2-Ethylhexanol 0.4 vol% N.D. +0.1 -0.2 -0.1 -1.6
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM N.D. -0.2 -1.2 +0.1 -0.5
carbon source carbon source D-Glucose 55.5 mM N.D. +0.1 -1.1 -0.4 -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.1 +0.1 -0.1 -1.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.2 +0.3 -0.0 -1.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 +0.4 -0.8 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.4 +0.2 -1.2
nitrogen source Ammonium chloride and TNT (N) N.D. -0.3 -0.6 -0.9 +0.3
nitrogen source Ammonium chloride and TNT (N) N.D. -0.3 -0.4 -1.1 +0.4
nitrogen source Ammonium chloride and TNT (N) N.D. -0.3 -0.8 -0.7 +0.5
carbon source ferulate (C); with MOPS N.D. -0.6 +0.4 -0.0 -1.0
carbon source carbon source 2-Deoxy-D-glucose 50 mM N.D. +0.2 -1.0 +0.2 -0.6
temperature shift Temperature shift 30_to_21; with MOPS N.D. -0.7 -0.5 +0.6 -0.5
nitrogen source D-2-Aminobutyric (N) N.D. -0.3 -0.3 -1.0 +0.6
nitrogen source NAG (N); with MOPS N.D. +0.2 -1.2 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.0 +0.8 -0.7 -0.1
pH D-Glucose (C) pH 6 N.D. -0.5 -0.6 -0.4 +0.6
pH pH 7 N.D. +0.4 -0.6 +0.2 -0.8
nitrogen source Propandiamine (N) N.D. +0.5 -0.1 -1.2 +0.2
pH pH 8 N.D. +0.3 -1.3 +0.6 +0.0
temperature shift Temperature shift 30_to_25; with MOPS N.D. -1.0 +0.4 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 -0.4 +0.2 -0.7
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