Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1633 and PP_1634 are separated by 216 nucleotidesPP_1634 and PP_1635 are separated by 179 nucleotidesPP_1635 and PP_1636 are separated by 73 nucleotidesPP_1636 and PP_1637 overlap by 4 nucleotides PP_1633: PP_1633 - conserved exported protein of unknown function, at 1,830,486 to 1,830,905 _1633 PP_1634: PP_1634 - conserved protein, at 1,831,122 to 1,831,832 _1634 PP_1635: PP_1635 - DNA-binding response regulator, at 1,832,012 to 1,832,662 _1635 PP_1636: PP_1636 - diacylglycerol kinase, at 1,832,736 to 1,833,101 _1636 PP_1637: PP_1637 - Transcriptional regulator, LysR family, at 1,833,098 to 1,834,024 _1637
Group Condition PP_1633 PP_1634 PP_1635 PP_1636 PP_1637
carbon source acetate (C) -0.6 -0.1 -7.7 N.D. +0.2
carbon source Acetate Carbon Source (20mM) +0.2 +0.2 -6.3 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +0.1 -6.0 N.D. -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.6 +0.0 -4.5 N.D. -0.5
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 -0.0 -5.8 N.D. +0.7
carbon source Acetate Carbon Source (5mM) +0.3 +0.0 -5.0 N.D. -0.3
phage P. putida Sci small MOI 0.1 -1.0 +0.1 -2.1 N.D. -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 +0.1 -3.0 N.D. -0.2
carbon source acetate (C) -0.5 -0.2 -3.1 N.D. +0.0
nitrogen source Propandiamine (N) +0.0 +0.1 -3.5 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 +0.2 -1.7 N.D. -0.9
carbon source Acetate Carbon Source (5mM) +0.1 -0.3 -3.1 N.D. -0.1
phage P. putida Missley MOI 0.1 -1.0 +0.1 -1.9 N.D. -0.5
nitrogen source NAG (N); with MOPS -1.1 -0.0 -0.4 N.D. -1.7
pH Growth at pH6 and (C) Trisodium citrate -1.5 -0.1 -1.0 N.D. -0.6
carbon source Acetate Carbon Source (20mM) +0.5 +0.3 -3.7 N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 +0.2 -3.2 N.D. +0.0
nitrogen source 2,6-diaminopimelic (N) -1.2 -0.1 -1.7 N.D. +0.1
carbon source propionate (C) +0.0 +0.1 -2.8 N.D. +0.0
carbon source Levulinic Acid (C) +0.2 +0.4 -3.4 N.D. +0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.3 -0.3 -1.2 N.D. -0.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.5 +0.3 -1.7 N.D. -0.2
carbon source ferulate (C); with MOPS -0.5 +0.3 -1.5 N.D. -0.3
nitrogen source 2,6-diaminopimelic (N) -2.1 +0.3 +0.2 N.D. -0.0
carbon source Levulinic Acid (C) +0.4 +0.3 -2.1 N.D. +0.2
nitrogen source nitrate (N) +0.5 -0.0 +0.6 N.D. -1.5
pH Growth at pH8 and (C) Trisodium citrate +0.8 -0.3 +0.6 N.D. -1.5
temperature Growth at 25C +1.1 +0.2 +0.8 N.D. -1.4
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.1 +0.2 +3.9 N.D. +0.2
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.5 +0.2 +3.6 N.D. -0.1
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