Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1604 and PP_1605 are separated by 1 nucleotidesPP_1605 and PP_1606 are separated by 186 nucleotidesPP_1606 and PP_1607 are separated by 106 nucleotidesPP_1607 and PP_1608 are separated by 171 nucleotides PP_1604: PP_1604 - Lipid-A-disaccharide synthase, at 1,798,078 to 1,799,205 _1604 PP_1605: PP_1605 - Ribonuclease HII, at 1,799,207 to 1,799,830 _1605 PP_1606: PP_1606 - DNA polymerase III, alpha subunit, at 1,800,017 to 1,803,541 _1606 PP_1607: PP_1607 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 1,803,648 to 1,804,595 _1607 PP_1608: PP_1608 - tRNA(Ile)-lysidine synthase, at 1,804,767 to 1,806,050 _1608
Group Condition PP_1604 PP_1605 PP_1606 PP_1607 PP_1608
carbon source acetate (C) N.D. -4.6 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -3.9 N.D. N.D. N.D.
nitrogen source NAG (N); with MOPS N.D. -2.1 N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 N.D. -2.0 N.D. N.D. N.D.
stress R2A with Fusaric 240 ug/mL N.D. -2.0 N.D. N.D. N.D.
phage P. putida Sci small MOI 0.1 N.D. -1.9 N.D. N.D. N.D.
phage P. putida PUT 7 MOI 1 N.D. -1.6 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.5 N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. -1.4 N.D. N.D. N.D.
nitrogen source D-2-Aminobutyric (N) N.D. -1.4 N.D. N.D. N.D.
temperature shift Temperature shift 10_to_21; with MOPS N.D. -1.4 N.D. N.D. N.D.
nitrogen source no extra (N); with MOPS N.D. -1.4 N.D. N.D. N.D.
pH pH 7 N.D. -1.3 N.D. N.D. N.D.
pH Growth at pH6 and (C) Trisodium citrate N.D. -1.3 N.D. N.D. N.D.
pH Growth at pH7 and (C) D-Glucose N.D. -1.3 N.D. N.D. N.D.
nitrogen source Propiolactam (N) N.D. -1.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.1 N.D. N.D. N.D.
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x N.D. -1.1 N.D. N.D. N.D.
carbon source 1,4-Butanediol (C) N.D. -1.1 N.D. N.D. N.D.
pH Growth at pH7 and (C) Trisodium citrate N.D. -1.1 N.D. N.D. N.D.
temperature shift Temperature shift 30_to_34 N.D. -1.1 N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate N.D. +1.1 N.D. N.D. N.D.
temperature shift Temperature shift 30_to_21; with MOPS N.D. +1.1 N.D. N.D. N.D.
stress Growth with Chloride 500 mM N.D. +1.1 N.D. N.D. N.D.
carbon source D-Glucose (C); with MOPS N.D. +1.2 N.D. N.D. N.D.
carbon source D-Glucose (C) N.D. +1.2 N.D. N.D. N.D.
stress Growth with Chloride 200 mM; with MOPS N.D. +1.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.3 N.D. N.D. N.D.
pH Valerolactone (C) pH 6.5 N.D. +1.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.4 N.D. N.D. N.D.
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