Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1561	PP_1562	PP_1563	PP_1564	PP_1565
nitrogen source	Propandiamine (N)	-0.3	-4.1	+0.1	-0.7	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-3.9	+0.1	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-3.7	-0.1	+0.3	+0.0
stress	Growth with Chloride 500 mM; with MOPS	+0.4	-3.3	-0.1	-0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.2	-2.2	-0.3	-0.3	-0.2
nitrogen source	Caprolactam (N)	-0.4	-2.6	-0.2	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-2.4	+0.1	-0.1	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	-1.0	+0.0	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-1.9	+0.0	+0.3	+0.3
nitrogen source	nitrite (N)	+0.5	-1.9	-0.0	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6	-3.0	+0.3	+0.4	+0.2
nitrogen source	no extra (N); with MOPS	-0.1	-1.7	-0.2	+0.3	+0.3
temperature shift	Temperature shift 10_to_25; with MOPS	-0.2	-1.7	+0.2	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-1.4	+0.1	+1.0	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.9	+1.1	+0.2	-0.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+1.0	+0.2	+0.7	+0.5
carbon source	L-Lysine (C)	-0.1	+1.2	+0.8	+0.4	+0.4
carbon source	L-Leucine (C)	+0.6	+0.4	+0.8	+0.5	+0.6
phage	P. putida Sci small MOI 0.1	+0.6	+1.2	+0.0	+0.5	+0.9
carbon source	L-Proline (C)	+0.5	+0.7	+0.9	+0.6	+0.7
carbon source	Heptanoic (C)	+0.5	+1.2	+0.6	+0.4	+0.5
carbon source	1-Pentanol (C)	+0.4	+1.2	+0.5	+0.5	+0.8
carbon source	Decanoic (C)	+0.4	+0.9	+0.7	+0.7	+0.7
carbon source	Hexanoic (C)	+0.7	+1.1	+0.8	+0.7	+0.8
carbon source	1,3-Butandiol (C)	+0.8	+1.5	+1.0	+0.9	+0.9
carbon source	pyruvate (C)	+1.1	+1.0	+1.3	+1.1	+1.2
carbon source	D-Glucose (C) 2.5 mM	+1.0	+1.3	+1.0	+1.4	+1.3
carbon source	Lauric (C)	+1.1	+1.6	+1.3	+1.2	+1.2
carbon source	Myristic (C)	+1.4	+1.9	+1.2	+1.2	+1.3
carbon source	Valeric (C)	+1.4	+2.2	+1.2	+1.3	+1.5