Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1556	PP_1557	PP_1558	PP_1559	PP_1560
pH	Growth at pH6 and (C) D-Glucose	-0.1	+0.1	+0.1	-3.1	+0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.3	-0.5	-0.1	-1.0	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.7	-0.4	-0.4	-1.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-0.6	+0.5	-1.3	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.4	-0.6	-0.7	+0.4
pH	Growth at pH7 and (C) D-Glucose	-0.5	+0.0	-0.5	+0.7	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.6	-0.1	-0.8	-1.2
no stress control	Growth with no stress	+0.8	+0.2	-0.4	-1.1	-0.5
nitrogen source	D-2-Aminobutyric (N)	+0.6	-0.3	-1.0	-0.2	+0.4
nitrogen source	Urea (N); with MOPS	-0.4	-0.1	+0.3	+0.8	-1.1
phage	P. putida Sci Big MOI 0.1	-0.5	+0.4	-0.2	-0.6	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.5	+0.6	+0.7	+0.1
nitrogen source	Propiolactam (N)	+1.2	+0.3	+0.5	-0.8	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	+1.0	+0.3	+0.3	-0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.5	-0.3	+0.5	+0.9	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.6	-0.3	-0.4	+1.3	-0.0
nitrogen source	2,6-diaminopimelic (N)	-0.6	+0.9	+0.4	+0.9	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.5	+0.2	+0.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.4	-0.1	+1.6	-0.3
carbon source	Valeric (C)	+0.8	-0.1	-0.1	-0.5	+1.6
carbon source	Lauric (C)	+0.3	-0.2	-0.0	+0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.4	+0.4	+1.3	-0.3
nitrogen source	no extra (N); with MOPS	+0.8	+0.2	-0.1	+0.7	+0.7
carbon source	ferulate (C); with MOPS	+0.6	-0.1	+0.4	+1.3	+0.3
temperature shift	Temperature shift 30_to_21; with MOPS	+0.5	+0.4	+0.5	+0.7	+0.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.7	+0.6	+0.6	+0.7	+0.2
carbon source	1,3-Butandiol (C)	+0.9	+0.2	-0.1	+0.4	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	+0.0	+0.3	+0.7	+0.0
carbon source	L-Leucine (C)	+0.1	+0.7	+0.6	+0.7	+1.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+1.5	+0.8	+0.6	+0.5	+0.5