Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1519 and PP_1520 are separated by 76 nucleotidesPP_1520 and PP_1521 are separated by 69 nucleotidesPP_1521 and PP_1522 are separated by 23 nucleotidesPP_1522 and PP_1523 are separated by 122 nucleotides PP_1519: PP_1519 - putative Lipoprotein, at 1,725,202 to 1,725,600 _1519 PP_1520: PP_1520 - glycerol-3-phosphate acyltransferase, at 1,725,677 to 1,728,163 _1520 PP_1521: PP_1521 - conserved protein of unknown function, at 1,728,233 to 1,728,373 _1521 PP_1522: PP_1522 - major cold shock protein, at 1,728,397 to 1,728,606 _1522 PP_1523: PP_1523 - conserved protein of unknown function, at 1,728,729 to 1,729,106 _1523
Group Condition PP_1519 PP_1520 PP_1521 PP_1522 PP_1523
phage PUT 8 MOI 1 -0.6 -0.0 +0.2 +0.7 -8.0
phage P. putida South MOI 1 -0.2 -0.3 -0.3 +0.3 -3.0
phage P. putida South MOI 0.1 +0.1 -0.1 -0.1 +0.7 -4.1
phage P. putida PUT10 MOI 10 +0.0 -0.1 -0.5 +0.5 -3.0
phage P. putida PUT10 MOI 10 +0.0 -0.1 -0.8 +0.3 -2.5
phage P. putida PUT10 MOI 0.1 -0.1 -0.4 -0.1 +0.0 -2.2
phage P. put South MOI 10 -0.2 +0.2 -0.1 +0.3 -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.7 -0.2 -1.8 +0.5 -0.3
phage P. putida PUT10 MOI 1 -0.0 -0.2 +0.1 +0.5 -2.9
phage P. putida PUT 7 MOI 1 -0.3 +0.1 -0.9 -0.4 -1.0
phage P. put PUT 10 MOI 1 -0.4 -0.0 -0.1 +0.0 -2.0
phage P. put South MOI 1 -0.1 -0.2 -0.0 +0.2 -2.3
phage P. putida South MOI 0.1 +0.1 -0.1 -0.3 +0.2 -2.3
phage P. put PUT 10 MOI 0.1 +0.2 -0.0 -0.3 -0.0 -2.2
phage P. put PUT 10 MOI 0.1 -0.2 -0.3 -0.1 +0.2 -1.8
phage P. put PUT 10 MOI 10 +0.0 -0.2 +0.1 +0.2 -2.5
phage P. putida Sci Big MOI 0.1 -1.5 -0.0 -0.1 -0.7 +0.2
phage P. put PUT 10 MOI 10 +0.2 -0.0 -0.4 +0.5 -2.2
phage P. putida PUT10 MOI 1 -0.1 -0.2 +0.4 +0.2 -2.2
phage P. putida Missley MOI 0.1 -0.3 +0.2 -1.8 +0.1 -0.2
phage PUT8 MOI 0.1 -0.2 -0.2 +0.6 +1.0 -3.1
phage P. put South MOI 1 +0.2 -0.1 +0.1 +0.1 -2.0
nitrogen source Urea (N) +0.2 +0.2 -0.6 +0.6 -1.3
phage PUT8 MOI 10 -0.2 +0.1 +0.2 +0.5 -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.3 -1.2 +0.3 +0.5
phage PUT8 MOI 0.1 -0.2 -0.1 +0.1 +1.0 -1.5
pH Growth at pH6 and (C) D-Glucose -0.2 -0.2 +1.0 -0.3 -0.7
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.4 -0.1 -0.8 +0.7 -0.5
nitrogen source 2,6-diaminopimelic (N) +0.2 -0.3 +0.8 -1.1 +0.3
carbon source L-Alanine (C) -0.0 -0.2 +0.7 +1.3 +0.6
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