Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1517	PP_1518	PP_1519	PP_1520	PP_1521
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.1	-0.6	-0.7	-0.2	-1.8
phage	P. putida Sci small MOI 0.1	-0.1	-1.8	+0.3	-0.3	-1.0
phage	P. putida Missley MOI 0.1	-0.0	-0.4	-0.3	+0.2	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	-0.7	+0.2	-0.3	-1.2
carbon source	DL-2-Aminoadipic 10 mM (C)	-0.1	-0.4	-0.1	-0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.4	+0.1	-0.8	+0.1	-0.5
pH	pH 7	+0.0	-0.5	-0.9	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	-0.2	-0.0	-1.0
phage	P. putida Sci Big MOI 0.1	-0.2	+0.5	-1.5	-0.0	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	-0.6	-0.3	-0.1	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.6	-0.2	-0.4	+0.2	-0.3
phage	P. putida South MOI 10	+0.2	-0.0	+0.0	+0.1	-1.3
temperature	Growth at 30C; with MOPS	-0.1	+0.3	-0.0	-0.2	-1.0
carbon source	Valeric (C)	-0.2	-0.0	-0.7	-0.4	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	-0.2	+0.4	-0.1	-0.8
carbon source	5-Aminovaleric 10 mM (C)	-0.2	-0.7	-0.4	+0.2	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.4	-0.2	-0.1	+0.1	-1.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.4	-0.6	+0.2	+0.1	-0.8
temperature shift	Temperature shift 30_to_25	+0.3	-0.2	-0.5	+0.3	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.2	+0.2	-0.3	+0.3	-0.8
temperature shift	Temperature shift 10_to_25; with MOPS	+0.2	-0.4	-0.5	-0.1	+0.5
nitrogen source	2,6-diaminopimelic (N)	-0.2	-0.8	+0.2	-0.3	+0.8
carbon source	ferulate (C); with MOPS	-0.1	+0.4	-0.7	+0.4	+0.0
carbon source	ferulate (C); with MOPS	-0.1	+0.5	+0.2	+0.3	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	-0.4	+0.3	-0.0	+0.7
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.2	-0.2	-0.2	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.4	+0.7	+0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-0.0	+0.6	-0.2	+0.7
stress	Formaldehyde 0.03125 vol%	-0.1	+0.5	+0.4	+0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.2	+0.1	+0.2	+1.2