Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1502 and PP_1503 are separated by 50 nucleotidesPP_1503 and PP_1504 are separated by 219 nucleotidesPP_1504 and PP_1505 are separated by 148 nucleotidesPP_1505 and PP_1506 are separated by 257 nucleotides PP_1502: PP_1502 - OmpA family protein, at 1,707,324 to 1,708,115 _1502 PP_1503: PP_1503 - conserved protein of unknown function, at 1,708,166 to 1,708,636 _1503 PP_1504: PP_1504 - conserved protein of unknown function, at 1,708,856 to 1,709,233 _1504 PP_1505: PP_1505 - Phosphoenolpyruvate carboxylase, at 1,709,382 to 1,712,009 _1505 PP_1506: PP_1506 - Adenylate kinase, at 1,712,267 to 1,712,917 _1506
Group Condition PP_1502 PP_1503 PP_1504 PP_1505 PP_1506
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -1.8 -0.2 +0.2 N.D.
carbon source ferulate (C); with MOPS -1.3 -1.3 -0.4 +0.4 N.D.
pH Growth at pH8 and (C) D-Glucose +0.0 -1.9 -0.2 +0.2 N.D.
nitrogen source D-2-Aminobutyric (N) -0.2 -0.1 +0.6 -2.1 N.D.
phage P. putida Missley MOI 0.1 -0.9 -0.6 +0.2 -0.5 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.3 -0.1 +0.2 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.1 +1.0 +1.1 -3.7 N.D.
nitrogen source Propandiamine (N) -0.4 -1.1 -0.3 +0.1 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -0.7 -0.9 +0.4 -0.3 N.D.
pH Growth at pH8 and (C) Trisodium citrate -0.6 -1.3 +0.1 +0.3 N.D.
carbon source carbon source 3-O-methyl-glucose 10 mM -0.4 -1.0 +0.6 -0.3 N.D.
nitrogen source D-2-Aminobutyric (N) +0.1 +0.1 +0.7 -1.7 N.D.
temperature shift Temperature shift 10_to_30 +0.4 -1.2 +0.2 +0.2 N.D.
pH pH 7 -0.5 -1.1 +0.7 +0.4 N.D.
pH Growth at pH6 and (C) D-Glucose -0.4 +1.1 -0.7 -0.3 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.2 -0.9 +0.5 +0.2 N.D.
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM +0.4 -0.7 +0.5 -0.5 N.D.
stress Growth with Chloride 500 mM; with MOPS -0.5 +0.6 +0.4 -0.6 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.9 +0.6 +0.4 N.D.
temperature shift Temperature shift 30_to_21; with MOPS -0.4 +0.7 +0.5 -0.4 N.D.
stress R2A with Fusaric 240 ug/mL +0.7 -0.8 +0.1 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.5 -0.3 +0.7 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.4 +0.4 +0.5 -0.8 N.D.
carbon source Valeric (C) -0.7 +0.7 +0.2 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 +1.1 +0.1 -0.1 N.D.
carbon source 3-Hydroxypropionate (C) +0.0 +0.7 +0.5 -0.6 N.D.
carbon source butyrate (C) -0.2 +1.3 +0.3 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.0 +0.3 -0.3 N.D.
carbon source D-Glucose (C); with MOPS +0.6 +0.7 +0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.8 +0.5 +0.3 N.D.
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