Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5471	PP_1473	PP_1474	PP_1475	PP_1476
nitrogen source	NAG (N); with MOPS	-4.4	+0.1	-0.2	+0.2	-0.1
phage	P. putida Missley MOI 0.1	-3.9	-0.4	+0.0	+0.3	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-1.5	-1.5	-0.2	-0.1	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-3.9	-0.5	-0.1	+0.1	+0.0
phage	P. putida PUT 7 MOI 1	-2.7	-1.2	+0.2	-0.5	+0.3
stress	R2A with Fusaric 240 ug/mL	-2.3	-0.5	-0.1	-0.4	-0.5
nitrogen source	Ammonium chloride (N)	-2.9	-0.5	-0.5	+0.5	-0.2
temperature	Growth at 25C	-1.8	+0.1	-0.6	-0.7	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-2.3	-0.4	+0.1	-0.3	-0.2
temperature shift	Temperature shift 30_to_25; with MOPS	-2.4	-0.7	-0.2	+0.3	+0.1
nitrogen source	nitrogen source nitrite 1mM	-1.2	-1.2	-0.3	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.7	-0.3	+0.2	+0.4	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+0.7	+0.1	-0.2	-2.6
temperature shift	Temperature shift 10_to_25; with MOPS	-2.9	+0.5	-0.0	+0.5	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.7	-0.7	-0.4	-0.8	-0.9
micoeukaryotes	C.elegans, mixed culture-2	-2.5	-0.3	+0.5	+0.5	+0.6
nitrogen source	2,6-diaminopimelic (N)	-1.8	-0.1	+0.3	-0.2	+0.6
pH	Growth at pH9 and (C) Trisodium citrate	+0.6	-0.1	+0.3	+0.3	-2.3
carbon source	ferulate (C); with MOPS	-1.6	+0.5	-0.2	-0.1	+0.5
pH	Growth at pH6 and (C) D-Glucose	-2.4	+0.5	+0.4	+0.3	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+1.3	-0.9	-0.3	-0.4	-0.4
pH	pH 9	+1.6	-0.3	-0.4	-0.3	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.1	-0.3	+0.6	+0.7	-1.4
carbon source	carbon source 4-vinylphenol 0.1 mM	+1.4	+0.2	-0.1	-0.4	-1.1
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+1.6	+0.0	-0.4	-0.4	-0.7
carbon source	carbon source D-Glucose 55.5 mM	+1.8	+0.1	-0.1	-1.2	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	+1.6	+0.3	-0.4	-0.1	-1.0
carbon source	4-Aminobutyric 10 mM (C)	+1.5	+0.2	-0.4	-1.1	+0.5
pH	pH 7	+2.1	+0.1	+0.1	-0.4	-0.7
phage	P. putida Sci small MOI 0.1	+1.3	+0.8	-0.4	-0.1	+0.5