Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1446	PP_1447	PP_1448	PP_1449	PP_1450
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-2.0	-0.2	-0.1	+0.1
carbon source	L-Leucine (C)	-0.3	-1.0	-0.2	-0.3	+0.1
nitrogen source	NAG (N); with MOPS	-0.2	-0.8	+0.1	-0.0	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.3	-0.8	-0.1	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-1.1	-0.1	-0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-1.1	-0.0	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-1.8	-0.1	+0.2	+0.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	-0.7	-0.5	-0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.1	-0.5	-0.5	-0.2	-0.1
carbon source	L-Leucine (C)	-0.2	-0.6	-0.3	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.3	-0.5	-0.1	+0.1
pH	Growth at pH6 and (C) D-Glucose	-0.0	-1.0	-0.3	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.1	-0.3	+0.2	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.3	-0.8	-0.2	+0.1	+0.3
stress	Growth with Chloride 500 mM; with MOPS	-0.2	-0.8	+0.3	+0.1	-0.2
stress	Growth with Chloride 200 mM	-0.2	-0.6	+0.3	+0.0	-0.3
phage	P. putida PUT 7 MOI 1	+0.3	-0.4	-0.8	+0.2	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.5	-0.3	+0.1	-0.3
nitrogen source	Urea (N)	-0.1	+0.4	-0.3	-0.3	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	-0.8	-0.1	-0.0	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.7	+0.3	-0.2	+0.1	+0.1
carbon source	L-Lysine (C)	-0.5	+0.7	-0.4	-0.1	-0.1
nitrogen source	nitrite (N)	-0.2	-0.5	-0.2	+0.3	+0.2
carbon source	Trisodium citrate (C)	-0.3	+0.2	+0.4	-0.3	-0.3
nitrogen source	D-2-Aminobutyric (N)	+0.2	-0.8	+0.5	-0.1	+0.2
temperature shift	Temperature shift 30_to_4; with MOPS	-0.3	+0.6	+0.2	-0.0	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	+0.3	+0.5	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.7	-0.2	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.5	+0.4	-0.2	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.1	+0.9	+0.5	+0.3	+0.0