Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1411	PP_5470	PP_1412	PP_1413	PP_1414
nitrogen source	NAG (N); with MOPS	-0.1	+0.3	-0.9	+0.1	-0.1
temperature shift	Temperature shift 30_to_21; with MOPS	-0.1	+0.1	-0.1	-0.8	+0.2
stress	R2A with Fusaric 240 ug/mL	-0.2	-0.1	-0.5	+0.3	-0.2
carbon source	Valeric (C)	-0.1	+0.2	-0.8	+0.1	-0.1
stress	Geraniol 1 vol%	-0.5	+0.3	-0.3	-0.1	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	-0.1	-0.7	+0.3	+0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.1	-0.0	-0.4	+0.5	-0.2
phage	P. putida Sci small MOI 0.1	+0.2	+0.1	+0.2	-0.7	+0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-0.4	+0.3	+0.3	-0.2	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.0	+0.2	+0.2	-0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.0	-0.3	+0.6	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	+0.1	-0.6	+0.9	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.2	-0.2	+0.6	-0.0
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.0	-0.0	+0.5	+0.3	-0.4
carbon source	Delta-Nonalactone (C)	-0.1	-0.0	-0.3	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.1	-0.3	+0.5	-0.1
carbon source	Nonanoic (C)	+0.0	+0.1	-0.3	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.2	-0.4	+0.8	-0.0
stress	Isobutyl alcohol 0.6 vol%	-0.1	-0.0	-0.2	+0.8	+0.1
carbon source	Myristic (C)	+0.0	+0.5	-0.3	+0.3	+0.2
carbon source	L-Leucine (C)	+0.2	-0.2	+0.4	+0.5	-0.2
carbon source	ferulate (C); with MOPS	+0.2	+0.0	-0.2	+0.4	+0.3
pH	pH 8	+0.2	+0.2	+0.4	+0.3	-0.2
pH	pH 6	+0.1	+0.4	+0.4	+0.6	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.2	+0.0	+0.6	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.0	+0.9	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+1.2	+0.0	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.7	+1.0	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+1.3	+0.4	-0.3	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+1.2	+0.6	+0.6	-0.1