Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_1409	PP_1410	PP_1411	PP_5470	PP_1412
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3	-5.6	-0.0	+0.2	-0.1
nitrogen source	NAG (N); with MOPS	-0.3	-4.3	-0.1	+0.3	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-5.2	+0.3	-0.0	-0.2
nitrogen source	Propandiamine (N)	-0.4	-4.3	+0.1	+0.0	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	-4.3	+0.1	+0.0	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.1	-4.4	-0.1	+0.1	+0.1
temperature shift	Temperature shift 30_to_34; with MOPS	+0.1	-4.3	-0.0	+0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	-3.4	+0.0	-0.1	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.4	-2.7	-0.3	+0.1	-0.4
carbon source	ferulate (C); with MOPS	+0.2	-4.0	+0.2	+0.0	-0.2
nitrogen source	2,6-diaminopimelic (N)	-0.3	-3.3	-0.1	+0.4	-0.4
phage	P. putida Sci small MOI 0.1	-0.2	-3.7	+0.2	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-2.8	-0.2	-0.0	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.9	-1.7	-0.2	-0.2	-0.0
phage	P. putida Missley MOI 0.1	+0.2	-3.1	-0.0	-0.1	+0.1
pH	Growth at pH8 and (C) Trisodium citrate	+0.2	-2.8	+0.0	+0.0	-0.1
phage	P. putida Sci Big MOI 0.1	+0.1	-2.8	+0.0	+0.4	-0.2
micoeukaryotes	C.elegans, mixed culture-1	-0.7	-1.5	-0.3	-0.1	+0.1
micoeukaryotes	C.elegans, mixed culture-2	-0.2	-2.4	-0.1	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-2.6	+0.1	-0.2	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.3	-2.2	+0.1	+0.1	+0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.1	-1.8	-0.4	+0.3	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-2.1	+0.1	+1.2	+0.6
stress	R2A with Fusaric 240 ug/mL	-0.1	+2.0	-0.2	-0.1	-0.5
carbon source	D-Glucose (C)	+0.3	+1.7	+0.2	+0.1	-0.5
temperature shift	Temperature shift 30_to_34; with MOPS	+0.2	+2.0	+0.1	+0.0	-0.3
no stress control	Growth with no stress	+0.4	+2.2	-0.3	+0.1	-0.2
nitrogen source	Ammonium chloride (N)	+0.2	+2.0	+0.1	-0.2	+0.2
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.1	+3.4	-0.1	+0.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+2.9	+0.2	+0.1	+0.1