Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1402	PP_1403	PP_1404	PP_5469	PP_1406
carbon source	Glutaric (C)	-4.6	-1.5	-0.3	+0.2	-0.0
carbon source	Glutaric (C)	-4.4	-1.3	-0.2	+0.1	+0.2
carbon source	a-Ketoglutaric (C)	-2.6	-1.0	-0.1	-0.1	-0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	-0.1	-3.5	-0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	+0.1	-0.7	-1.7	-0.2
carbon source	1,5-Pentanediol (C)	-2.0	-0.6	-0.1	+0.2	-0.1
carbon source	Trisodium citrate (C)	-0.3	-0.0	-1.9	-0.5	+0.1
phage	P. putida Sci small MOI 0.1	+0.0	-0.1	-1.9	-0.1	-0.3
carbon source	1,5-Pentanediol (C)	-2.1	-0.4	-0.2	+0.3	-0.0
carbon source	Valerolactone (C)	-1.2	-0.5	-0.3	+0.0	-0.2
pH	Valerolactone (C) pH 6.5	-1.5	+0.1	-1.7	+0.9	+0.1
carbon source	D-Glucose (C)	-0.1	-0.2	-2.1	+0.4	-0.0
nitrogen source	NAG (N); with MOPS	+0.3	-0.2	-1.7	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	-1.4	-0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.2	-1.6	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.1	+0.1	-1.5	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.2	-0.9	-0.8	+0.3
carbon source	Valerolactone (C)	-1.7	-0.3	+0.1	+0.6	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	-0.1	-1.4	-0.4	+0.3
pH	Growth at pH9 and (C) Trisodium citrate	-0.3	-0.2	-0.4	+0.7	-0.7
temperature	Growth at 30C; with MOPS	-0.2	-0.2	+0.7	-0.7	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.2	-0.0	-1.0	+0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	-0.7	+0.7	-0.3
phage	P. putida PUT10 MOI 10	+0.0	+0.4	+0.6	-0.7	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.5	+0.5	+0.9	-0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+1.0	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.2	+1.2	-0.4	+0.3
pH	pH 7	-0.3	-0.2	+1.1	+0.6	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.3	+0.1	+0.9	+0.6	-0.2
stress	Geraniol 1 vol%	+0.9	+0.9	+0.4	+0.2	+0.2