Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1399 and PP_1400 are separated by 300 nucleotidesPP_1400 and PP_1401 are separated by 253 nucleotidesPP_1401 and PP_1402 overlap by 7 nucleotidesPP_1402 and PP_1403 are separated by 130 nucleotides PP_1399: PP_1399 - conserved exported protein of unknown function, at 1,593,398 to 1,593,802 _1399 PP_1400: PP_1400 - Alpha-ketoglutarate permease, at 1,594,103 to 1,595,422 _1400 PP_1401: PP_1401 - C4-dicarboxylate transport transcriptional regulatory protein, at 1,595,676 to 1,597,010 _1401 PP_1402: PP_1402 - C4-dicarboxylate transport sensor protein, at 1,597,004 to 1,598,761 _1402 PP_1403: PP_1403 - periplasmic beta-D-glucoside glucohydrolase, at 1,598,892 to 1,601,183 _1403
Group Condition PP_1399 PP_1400 PP_1401 PP_1402 PP_1403
carbon source Glutaric (C) N.D. -4.4 -5.2 -4.6 -1.5
carbon source Glutaric (C) N.D. -4.8 -4.7 -4.4 -1.3
carbon source a-Ketoglutaric (C) N.D. -2.8 -2.6 -2.6 -1.0
carbon source 1,5-Pentanediol (C) N.D. -2.6 -2.9 -2.1 -0.4
carbon source 1,5-Pentanediol (C) N.D. -1.9 -1.8 -2.0 -0.6
carbon source Valerolactone (C) N.D. -1.8 -2.2 -1.7 -0.3
carbon source Valerolactone (C) N.D. -1.3 -1.5 -1.2 -0.5
pH Valerolactone (C) pH 6.5 N.D. -1.3 -1.1 -1.5 +0.1
pH Valerolactone (C) pH 6.5 N.D. -1.3 -0.9 -0.7 +0.1
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. -0.2 -0.9 -0.6 -0.2
pH pH 4 N.D. -0.1 -1.2 -0.3 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.2 -0.9 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -0.2 -0.8 -0.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -0.0 -1.0 -0.3 +0.1
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM N.D. +0.1 -0.7 -0.2 -0.3
carbon source carbon source Bisabolene 48.9 mM N.D. +0.1 -0.8 -0.1 -0.2
carbon source carbon source 4-vinylphenol 0.01 mM N.D. +0.2 -1.0 -0.1 -0.2
carbon source carbon source 2-Deoxy-D-glucose 10 mM N.D. -0.2 -0.5 -0.3 -0.2
carbon source carbon source D-Glucose 55.5 mM N.D. +0.2 -0.8 -0.3 -0.2
pH pH 9 N.D. +0.1 -0.9 -0.2 -0.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. -0.0 -0.8 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.1 -0.4 -0.6 +0.1
pH Growth at pH7 and (C) D-Glucose N.D. -0.6 +0.5 +0.0 -0.3
nitrogen source D-2-Aminobutyric (N) N.D. -0.0 -0.3 -0.5 +0.5
stress Growth with Chloride 500 mM; with MOPS N.D. +0.2 +0.2 -0.3 -0.3
stress Growth with Chloride 500 mM N.D. +0.3 +0.3 -0.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.1 +0.6 -0.2 -0.3
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.0 +0.6 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 +0.7 +0.2 -0.3
stress Geraniol 1 vol% N.D. -0.0 +0.1 +0.9 +0.9
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