Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1395 and PP_1396 are separated by 202 nucleotidesPP_1396 and PP_1397 are separated by 16 nucleotidesPP_1397 and PP_1398 are separated by 0 nucleotidesPP_1398 and PP_1399 are separated by 119 nucleotides PP_1395: PP_1395 - Transcriptional regulator, AraC family, at 1,590,973 to 1,591,893 _1395 PP_1396: PP_1396 - conserved protein of unknown function, at 1,592,096 to 1,592,389 _1396 PP_1397: PP_1397 - conserved protein of unknown function, at 1,592,406 to 1,592,672 _1397 PP_1398: PP_1398 - conserved protein of unknown function, at 1,592,673 to 1,593,278 _1398 PP_1399: PP_1399 - conserved exported protein of unknown function, at 1,593,398 to 1,593,802 _1399
Group Condition PP_1395 PP_1396 PP_1397 PP_1398 PP_1399
temperature Growth at 30C; with MOPS +0.1 -1.4 -0.6 -0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.0 -1.1 -0.9 -0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 -0.8 -1.0 -0.3 N.D.
pH Growth at pH8 and (C) D-Glucose -0.4 -0.2 -1.2 -0.2 N.D.
nitrogen source Urea (N) -0.1 -1.8 -0.6 +0.4 N.D.
carbon source ferulate (C); with MOPS -0.2 -1.2 -0.2 -0.5 N.D.
carbon source D-Glucose (C) +0.0 -0.5 -1.6 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 -0.5 -1.1 -0.1 N.D.
phage P. putida Sci Big MOI 0.1 -0.0 -2.0 +0.4 +0.3 N.D.
carbon source Vanillin (C) -1.4 +0.3 +0.0 -0.1 N.D.
nitrogen source 2,6-diaminopimelic (N) +0.3 -0.2 -0.5 -0.7 N.D.
nitrogen source NAG (N); with MOPS -0.0 +0.4 -1.9 +0.6 N.D.
pH pH 7 +0.1 -0.8 -0.6 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.6 -0.6 +0.7 N.D.
carbon source Vanillin (C) -1.0 +0.3 -0.3 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.2 +0.5 -0.9 +0.0 N.D.
carbon source Vanillin (C) -1.0 +0.4 +0.2 -0.2 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.2 +0.7 -0.8 -0.2 N.D.
nitrogen source nitrogen source nitrate 20mM -0.0 +0.7 -0.8 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.8 -0.5 +0.5 N.D.
carbon source Vanillin (C) -0.9 +0.5 +0.2 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.1 -0.9 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 -0.8 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.5 -0.6 +1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.8 +0.4 +0.4 N.D.
nitrogen source D-2-Aminobutyric (N) +0.1 +0.4 +0.7 -0.8 N.D.
carbon source Valerolactone (C) -0.1 +0.9 +0.4 -0.6 N.D.
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.7 +0.5 -0.5 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +1.3 +0.1 -0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +1.4 +0.6 +0.2 N.D.
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