Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1388	PP_1389	PP_1390	PP_1391	PP_1392
pH	Growth at pH7 and (C) Trisodium citrate	-0.5	-0.2	-1.5	-0.3	-0.2
phage	P. putida PUT 7 MOI 1	-0.6	-0.3	-0.2	-0.5	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.9	-0.0	+0.1	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.2	-1.4	+0.3	-0.3
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	-0.0	-0.8	-1.0	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.7	-1.4	+0.1	+0.0
no phage control	Time6-nophage	+0.1	-1.1	-0.4	+0.1	-0.4
carbon source	2,3-Butanediol (C)	-0.4	-0.4	-0.3	-0.6	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-1.1	-0.5	+0.1	-0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.1	-1.1	-0.6	-0.3	+0.8
phage	P. putida Sci small MOI 0.1	-0.2	-0.7	+0.3	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.3	-1.5	+0.0	+0.1
phage	P. put South MOI 10	+0.0	-0.6	+0.4	-0.1	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.3	-0.5	-0.3	+0.5
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.1	-0.2	-1.6	+0.2	+0.8
pH	Growth at pH6 and (C) D-Glucose	+0.0	+0.4	-0.5	+0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.8	-0.1	-0.4	+0.8
nitrogen source	nitrogen source nitrite 0.5mM	+0.0	+0.6	-0.5	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	+0.2	-1.2	+0.3	-0.1
carbon source	carbon source D-Glucose 55.5 mM	-0.2	+0.2	-0.9	+0.0	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	-0.8	+0.7	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.2	-0.8	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	-1.0	+0.2	+0.1
phage	PUT 8 MOI 1	-0.3	+0.9	-0.6	+0.1	-0.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.2	+0.0	-0.8	+0.3	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	-0.1	-0.7	+0.1	+0.6
temperature shift	Temperature shift 30_to_25; with MOPS	+0.2	-0.4	+1.0	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.3	+0.7	+0.5	-0.7
nitrogen source	NAG (N); with MOPS	-0.1	-0.3	+0.7	+0.4	+0.7
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.2	+1.4	-0.2	+1.1