Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1370 and PP_1371 are separated by 168 nucleotidesPP_1371 and PP_1372 are separated by 168 nucleotidesPP_1372 and PP_1373 are separated by 121 nucleotidesPP_1373 and PP_1374 are separated by 312 nucleotides PP_1370: PP_1370 - Glycosyl transferase, group 1 family protein, at 1,558,926 to 1,560,047 _1370 PP_1371: PP_1371 - Methyl-accepting chemotaxis protein PctA, at 1,560,216 to 1,562,090 _1371 PP_1372: PP_1372 - conserved protein of unknown function, at 1,562,259 to 1,563,734 _1372 PP_1373: PP_1373 - phosphate transporter, at 1,563,856 to 1,565,328 _1373 PP_1374: PP_1374 - conserved protein of unknown function, at 1,565,641 to 1,565,841 _1374
Group Condition PP_1370 PP_1371 PP_1372 PP_1373 PP_1374
nitrogen source NAG (N); with MOPS -0.8 +0.6 -1.4 N.D. -1.3
carbon source ferulate (C); with MOPS -0.4 -0.8 -0.5 N.D. -1.1
carbon source ferulate (C); with MOPS -0.0 -0.1 -0.5 N.D. -1.8
pH pH 7 -0.4 -0.5 -0.7 N.D. -0.8
supernatant LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter -0.4 -0.5 -0.3 N.D. -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.0 -0.6 -0.2 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.4 -0.4 N.D. -1.3
nitrogen source D-2-Aminobutyric (N) -0.8 -0.4 +0.4 N.D. -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 -0.3 +0.3 N.D. -1.4
carbon source D-Glucose (C) +0.1 -0.5 +0.5 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.0 -0.9 N.D. +0.1
phage P. put PUT 10 MOI 1 +0.8 +0.3 +0.4 N.D. +0.5
phage P. put South MOI 1 +0.6 +0.3 +0.4 N.D. +0.9
phage P. put South MOI 0.1 +0.8 +0.4 +0.6 N.D. +0.4
phage P. put PUT 10 MOI 10 +0.6 +0.3 +0.7 N.D. +0.9
phage PUT 8 MOI 1 +0.5 +0.9 +0.2 N.D. +1.0
phage P. put South MOI 1 +0.9 +0.4 +0.4 N.D. +0.9
phage P. putida PUT10 MOI 0.1 +0.9 +0.4 +0.7 N.D. +0.6
phage P. put South MOI 0.1 +0.7 +0.6 +0.6 N.D. +0.8
phage P. putida PUT10 MOI 0.1 +0.8 +0.6 +0.8 N.D. +0.6
phage P. put PUT 10 MOI 10 +0.8 +0.4 +0.3 N.D. +1.4
phage P. putida PUT10 MOI 10 +0.9 +0.2 +0.9 N.D. +1.0
phage P. putida South MOI 0.1 +0.9 +0.5 +0.5 N.D. +1.2
phage PUT8 MOI 0.1 +1.0 +0.7 +0.7 N.D. +0.7
phage P. putida South MOI 0.1 +0.9 +0.8 +0.3 N.D. +1.0
phage P. putida PUT10 MOI 1 +0.9 +0.5 +0.7 N.D. +1.0
phage PUT8 MOI 0.1 +0.9 +0.9 +0.3 N.D. +1.1
phage P. putida PUT10 MOI 1 +0.9 +0.6 +0.7 N.D. +1.0
phage P. putida South MOI 1 +1.1 +0.8 +0.8 N.D. +1.3
phage P. putida PUT10 MOI 10 +1.1 +1.0 +0.8 N.D. +1.2
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