Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1324 and PP_1325 overlap by 4 nucleotidesPP_1325 and PP_1326 are separated by 177 nucleotidesPP_1326 and PP_1328 are separated by 733 nucleotidesPP_1328 and PP_1329 overlap by 4 nucleotides PP_1324: PP_1324 - putative endonuclease distantly related to archaeal Holliday junction resolvase, at 1,509,378 to 1,509,752 _1324 PP_1325: PP_1325 - putative lipoprotein, at 1,509,749 to 1,511,566 _1325 PP_1326: PP_1326 - 16S rRNA 2'-O-ribose C1402 methyltransferase, at 1,511,744 to 1,512,628 _1326 PP_1328: PP_1328 - Protein MraZ, at 1,513,362 to 1,513,835 _1328 PP_1329: PP_1329 - Ribosomal RNA small subunit methyltransferase H, at 1,513,832 to 1,514,779 _1329
Group Condition PP_1324 PP_1325 PP_1326 PP_1328 PP_1329
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.9 -3.6 -4.0 N.D.
carbon source Delta-Decalactone (C) -0.2 -0.2 -0.6 -6.9 N.D.
stress R2A with Fusaric 480 ug/mL -0.4 -4.4 -1.4 -1.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 -0.3 -0.4 -6.0 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -2.8 -0.1 -3.3 N.D.
phage PUT 8 MOI 1 +0.8 +0.9 -8.1 +0.5 N.D.
stress R2A with Fusaric 480 ug/mL -0.4 -2.9 -0.8 -1.7 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +0.1 -0.1 -0.7 -5.1 N.D.
carbon source Delta-Nonalactone (C) -0.6 +0.7 -0.3 -5.2 N.D.
carbon source 1,3-Hexanediol (C) -0.2 +0.4 -0.6 -4.9 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) -0.3 -0.1 -1.2 -3.7 N.D.
carbon source Delta-Decalactone (C) -0.4 +0.1 -0.2 -4.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.8 +0.8 -3.5 N.D.
carbon source 1,4-Butanediol (C) +0.3 -1.4 +0.6 -3.2 N.D.
phage P. put South MOI 1 +1.0 +1.2 -5.2 +0.7 N.D.
phage P. put PUT 10 MOI 1 +0.6 +1.0 -3.1 +0.3 N.D.
phage P. put South MOI 0.1 +0.8 +1.1 -2.8 -0.4 N.D.
phage P. put PUT 10 MOI 10 +1.0 +1.2 -3.7 +0.5 N.D.
phage P. put South MOI 1 +1.2 +1.3 -4.1 +0.6 N.D.
phage P. putida PUT10 MOI 10 +0.7 +1.0 -3.4 +0.8 N.D.
pH Growth at pH7 and (C) Trisodium citrate +0.3 +1.9 -1.7 -1.4 N.D.
phage P. putida PUT10 MOI 0.1 +1.0 +1.1 -3.8 +1.1 N.D.
phage P. putida PUT10 MOI 10 +1.0 +0.8 -2.8 +0.9 N.D.
phage PUT8 MOI 0.1 +1.0 +0.8 -2.9 +1.2 N.D.
phage P. putida South MOI 0.1 +0.7 +1.3 -2.5 +0.6 N.D.
phage P. putida PUT10 MOI 1 +0.5 +1.2 -2.5 +0.9 N.D.
phage P. put South MOI 0.1 +1.0 +1.0 -2.9 +1.1 N.D.
phage P. putida PUT10 MOI 0.1 +1.0 +1.3 -2.3 +0.9 N.D.
phage P. put PUT 10 MOI 10 +0.8 +1.1 -2.5 +1.5 N.D.
carbon source D-Glucose (C) -0.7 +3.6 -0.8 +0.7 N.D.
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