Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1319 and PP_1320 are separated by 116 nucleotidesPP_1320 and PP_1321 overlap by 20 nucleotidesPP_1321 and PP_1322 are separated by 61 nucleotidesPP_1322 and PP_1323 overlap by 4 nucleotides PP_1319: PP_1319 - Ubiquinol--cytochrome c reductase, cytochrome c1, at 1,506,100 to 1,506,879 _1319 PP_1320: PP_1320 - stringent starvation protein A, at 1,506,996 to 1,507,619 _1320 PP_1321: PP_1321 - ClpXP protease specificity-enhancing factor, at 1,507,600 to 1,508,061 _1321 PP_1322: PP_1322 - putative Lipoprotein, at 1,508,123 to 1,508,701 _1322 PP_1323: PP_1323 - factor modulating bacterial replication archosome assembly, at 1,508,698 to 1,509,285 _1323
Group Condition PP_1319 PP_1320 PP_1321 PP_1322 PP_1323
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.2 +0.1 -0.2 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.2 -0.0 -0.2 -1.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.5 +0.0 -0.2 -1.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.9 -0.1 +0.1 -0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.1 -0.0 -0.3 -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.7 -0.2 -0.2 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.3 +0.1 -0.6 -2.1 N.D.
nitrogen source Urea (N) -0.0 -0.1 +0.0 -3.8 N.D.
stress Growth with Chloride 200 mM; with MOPS -0.3 -0.3 +0.1 -3.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1 +0.2 -0.0 -2.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.3 +0.0 -0.1 -0.3 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 +0.1 -0.1 -3.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.3 -0.1 -0.1 -1.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.7 -0.1 -0.1 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 -0.5 -0.1 -2.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -0.6 +0.3 -1.6 N.D.
phage P. putida Sci small MOI 0.1 +0.3 -0.2 -0.5 -2.6 N.D.
temperature shift Temperature shift 30_to_21; with MOPS +0.7 -0.0 +0.2 -3.7 N.D.
nitrogen source nitrate (N) +0.0 +0.2 +0.1 -3.2 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.3 +0.4 -0.6 -1.3 N.D.
pH Growth at pH7 and (C) Trisodium citrate +0.3 -0.7 +0.4 -2.3 N.D.
carbon source L-Leucine (C) -3.3 +0.1 -0.2 +1.2 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 -2.7 +0.3 -0.5 +3.1 N.D.
phage PUT8 MOI 0.1 +0.8 +1.0 +0.4 +1.3 N.D.
phage P. put South MOI 1 +0.8 +1.1 +0.9 +0.9 N.D.
phage P. putida South MOI 0.1 +0.3 +1.2 +0.5 +1.6 N.D.
phage P. putida PUT10 MOI 1 +0.5 +1.2 +0.8 +1.3 N.D.
phage PUT8 MOI 0.1 +0.7 +1.1 +0.9 +1.1 N.D.
phage PUT 8 MOI 1 +0.9 +0.8 +0.9 +1.2 N.D.
phage P. putida PUT10 MOI 10 +0.5 +1.3 +0.7 +1.6 N.D.
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