Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1315 and PP_1316 are separated by 14 nucleotidesPP_1316 and PP_1317 are separated by 262 nucleotidesPP_1317 and PP_1318 overlap by 1 nucleotidesPP_1318 and PP_1319 overlap by 1 nucleotides PP_1315: PP_1315 - 50S ribosomal protein L13, at 1,503,198 to 1,503,626 _1315 PP_1316: PP_1316 - 30S ribosomal protein S9, at 1,503,641 to 1,504,033 _1316 PP_1317: PP_1317 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 1,504,296 to 1,504,889 _1317 PP_1318: PP_1318 - Cytochrome b, at 1,504,889 to 1,506,100 _1318 PP_1319: PP_1319 - Ubiquinol--cytochrome c reductase, cytochrome c1, at 1,506,100 to 1,506,879 _1319
Group Condition PP_1315 PP_1316 PP_1317 PP_1318 PP_1319
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -2.5 -3.9 -3.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -3.4 -2.5 -3.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -0.9 -3.5 -4.2
micoeukaryotes Tetrahymena sp., Mixed culture-2 N.D. N.D. -2.6 -3.4 -2.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -2.9 -2.1 -3.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -2.5 -2.3 -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -2.7 -2.0 -3.2
carbon source L-Leucine (C) N.D. N.D. -2.5 -1.9 -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -2.4 -2.6 -2.5
carbon source L-Leucine (C) N.D. N.D. -3.2 -2.1 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -2.6 -1.3 -2.6
carbon source L-Leucine (C) N.D. N.D. -2.3 -2.3 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -3.1 -2.3 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -2.0 -1.5 -2.7
carbon source Valerolactone (C) N.D. N.D. -2.0 -2.4 -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. -2.5 -1.4 -2.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -1.7 -2.7 -1.3
lb LB N.D. N.D. -1.9 -1.5 -2.1
stress Geraniol 1 vol% N.D. N.D. -1.6 -1.9 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. N.D. -2.4 -1.4 -1.4
micoeukaryotes C.elegans, mixed culture-1 N.D. N.D. -2.0 -2.2 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. N.D. -1.0 -1.9 -2.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.4 -1.6 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -1.6 -1.9 -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -1.7 -1.9 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -2.5 -1.2 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -0.6 -1.5 -2.8
carbon source L-Lysine 10 mM (C) N.D. N.D. -1.3 -1.6 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -0.8 -1.8 -2.3
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay N.D. N.D. +1.9 +1.4 +2.1
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