Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1307 and PP_1308 are separated by 127 nucleotidesPP_1308 and PP_1309 are separated by 71 nucleotidesPP_1309 and PP_1310 are separated by 135 nucleotidesPP_1310 and PP_1311 are separated by 25 nucleotides PP_1307: PP_1307 - AsnC family transcriptional regulator, at 1,494,965 to 1,495,444 _1307 PP_1308: PP_1308 - methionine gamma-lyase, at 1,495,572 to 1,496,768 _1308 PP_1309: PP_1309 - conserved exported protein of unknown function, at 1,496,840 to 1,497,277 _1309 PP_1310: PP_1310 - conserved hypothetical protein, at 1,497,413 to 1,498,048 _1310 PP_1311: PP_1311 - Tryptophan--tRNA ligase, at 1,498,074 to 1,499,423 _1311
Group Condition PP_1307 PP_1308 PP_1309 PP_1310 PP_1311
nitrogen source NAG (N); with MOPS -0.0 -0.2 +0.2 -6.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 +0.1 -1.5 -3.2 N.D.
nitrogen source D-2-Aminobutyric (N) +0.2 -0.3 -5.7 +0.7 N.D.
nitrogen source Propandiamine (N) -0.8 -0.0 -3.2 -1.1 N.D.
nitrogen source D-2-Aminobutyric (N) +1.1 +0.7 -4.6 -1.7 N.D.
phage P. putida South MOI 10 -0.5 -0.2 -2.4 -1.4 N.D.
phage P. put South MOI 10 -0.5 -0.2 -3.4 +0.2 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.0 -0.2 -3.1 -0.5 N.D.
carbon source D-Glucose (C) -0.4 -0.3 -0.1 -2.9 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.0 -0.2 -1.4 -2.1 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.4 -0.2 -1.9 -1.9 N.D.
micoeukaryotes C.elegans, mixed culture-1 +0.5 -0.1 -2.6 -1.0 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.4 -0.2 -1.3 -1.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7 -0.1 -0.4 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 -0.4 +0.2 -3.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 +0.0 +0.0 -1.7 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.3 +0.1 -1.9 -1.3 N.D.
carbon source Delta-Undecalactone (C) -0.2 +0.0 -2.9 +0.2 N.D.
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM +0.3 -0.0 -1.3 -1.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.0 +0.3 -2.2 -0.7 N.D.
nitrogen source L-Methionine (N) -1.3 -1.2 +0.4 -0.3 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.5 -0.0 -2.1 -0.8 N.D.
nitrogen source L-Methionine (N) -1.7 -1.2 +0.5 +0.1 N.D.
phage P. putida South MOI 10 -0.6 -0.2 -1.9 +0.9 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.9 +0.3 -2.2 -0.1 N.D.
carbon source Valeric (C) +0.3 +0.1 +1.8 -1.3 N.D.
carbon source ferulate (C); with MOPS -1.1 +0.4 +1.3 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.0 -1.5 +2.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.3 -0.6 +3.0 N.D.
stress 3-methyl-1-butanol 0.4 vol% +0.1 +0.1 +2.3 +0.6 N.D.
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