Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1304 and PP_1305 are separated by 94 nucleotidesPP_1305 and PP_1306 overlap by 4 nucleotidesPP_1306 and PP_1307 are separated by 94 nucleotidesPP_1307 and PP_1308 are separated by 127 nucleotides PP_1304: PP_1304 - sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase, at 1,490,338 to 1,492,239 _1304 PP_1305: PP_1305 - Colicin-E7 immunity protein, at 1,492,334 to 1,492,597 _1305 PP_1306: PP_1306 - Pyocin S-type Killer domain protein, at 1,492,594 to 1,494,870 _1306 PP_1307: PP_1307 - AsnC family transcriptional regulator, at 1,494,965 to 1,495,444 _1307 PP_1308: PP_1308 - methionine gamma-lyase, at 1,495,572 to 1,496,768 _1308
Group Condition PP_1304 PP_1305 PP_1306 PP_1307 PP_1308
carbon source Vanillin (C) -3.7 N.D. +0.1 +0.4 -0.1
nitrogen source Ammonium chloride (N) -2.1 N.D. -0.1 -0.6 -0.1
nitrogen source nitrate (N) -1.9 N.D. -0.1 -0.7 -0.2
carbon source Vanillin (C) -3.0 N.D. +0.0 +0.3 -0.0
nitrogen source Urea (N) -2.3 N.D. -0.0 -0.8 +0.4
carbon source 4-Hydroxyvalerate (C) (40mM) -2.4 N.D. +0.1 -0.3 +0.1
nitrogen source L-Methionine (N) +0.0 N.D. +0.3 -1.7 -1.2
nitrogen source L-Methionine (N) -0.2 N.D. +0.3 -1.3 -1.2
carbon source 4-Hydroxyvalerate (C) (40mM) -2.7 N.D. +0.1 +0.1 +0.1
pH Growth at pH7 and (C) Trisodium citrate -2.0 N.D. -0.0 -0.5 +0.4
carbon source ferulate (C); with MOPS -1.5 N.D. +0.1 -1.1 +0.4
carbon source Vanillin (C) -2.2 N.D. +0.2 -0.1 +0.1
nitrogen source nitrite (N) -1.9 N.D. +0.0 -0.4 +0.3
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -2.0 N.D. +0.2 -0.2 +0.2
pH Growth at pH6 and (C) Trisodium citrate -2.1 N.D. +0.0 +0.3 -0.1
carbon source 1,4-Butanediol (C) -2.4 N.D. +0.0 +0.6 -0.0
carbon source ferulate (C); with MOPS -1.9 N.D. +0.1 -0.3 +0.2
nitrogen source NAG (N) -2.1 N.D. -0.2 +0.4 +0.1
carbon source Trisodium citrate (C) -2.0 N.D. -0.1 +0.4 +0.1
nitrogen source Urea (N) -2.2 N.D. +0.2 +0.4 -0.0
pH Growth at pH6 and (C) Trisodium citrate -2.1 N.D. +0.0 +0.4 +0.0
pH Growth at pH6 and (C) Trisodium citrate -2.2 N.D. +0.1 +0.4 +0.1
carbon source ferulate (C); with MOPS -1.6 N.D. +0.1 -0.4 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 N.D. +0.2 -1.4 -0.7
carbon source carbon source D-Glucose 55.5 mM -1.7 N.D. -0.1 +0.4 +0.2
pH Growth at pH7 and (C) Trisodium citrate -1.9 N.D. -0.0 +0.6 +0.1
nitrogen source nitrite (N) -1.9 N.D. +0.1 +0.9 +0.2
carbon source acetate (C) -1.5 N.D. +0.3 +0.7 +0.1
nitrogen source D-2-Aminobutyric (N) -0.6 N.D. +0.3 +1.1 +0.7
carbon source L-Leucine (C) +1.4 N.D. +0.2 +0.5 +0.3
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