Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1271	PP_1272	PP_1273	PP_1274	PP_1275
stress	R2A with Fusaric 480 ug/mL	-1.7	-0.7	-1.3	-0.1	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.8	-0.9	-1.0	-0.2	-0.4
stress	R2A with Fusaric 480 ug/mL	-1.1	-1.0	-0.8	+0.1	-0.2
stress	R2A with Fusaric 480 ug/mL	-0.8	-0.8	-0.8	-0.1	-0.3
stress	R2A with Fusaric 480 ug/mL	-1.0	-0.9	-0.6	-0.1	-0.1
stress	R2A with Fusaric 480 ug/mL	-1.6	-0.4	-0.5	+0.1	-0.2
carbon source	4-Aminobutyric 10 mM (C)	-1.7	-0.2	-0.3	-0.3	-0.1
carbon source	carbon source 4-vinylphenol 0.01 mM	-1.0	+0.0	+0.3	-0.4	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.8	-0.3	-0.3	+0.2	-0.3
nitrogen source	2,6-diaminopimelic (N)	+0.7	-0.0	-1.0	+0.1	-1.1
pH	Growth at pH6 and (C) D-Glucose	-1.0	+0.0	-0.2	-0.4	+0.4
phage	P. putida Sci small MOI 0.1	-0.2	-0.7	-0.9	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.2	+0.4	-0.9	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.2	-0.4	+0.4	-0.2
no stress control	Growth with no stress	+0.4	-0.3	-0.3	+0.1	-0.8
pH	pH 7	-0.6	-0.0	-0.0	-0.8	+0.5
carbon source	carbon source Glycerol 108.6 mM	-1.0	+0.2	+0.1	-0.5	+0.4
temperature	Growth at 25C	-1.0	-0.3	+0.1	+0.2	+0.4
nitrogen source	D-2-Aminobutyric (N)	-1.4	-0.1	+0.0	+0.4	+0.6
pH	Growth at pH6 and (C) D-Glucose	+0.4	+0.1	-0.1	+0.4	-1.3
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-1.0	+0.0	+0.5	-0.2	+0.3
phage	P. putida Missley MOI 0.1	+0.7	+0.2	-0.4	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.0	-0.1	-0.2	+0.4	+0.7
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.0	+0.9	+0.1	-1.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.6	-0.3	+0.1	-0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.1	-0.5	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.0	+0.4	-0.6	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.1	+0.2	+0.4	-0.7
pH	Growth at pH8 and (C) D-Glucose	+0.6	-0.4	+0.1	+0.4	+0.4
nitrogen source	nitrogen source nitrite 1mM	-0.3	-0.0	+0.2	+0.8	+0.6