Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1264	PP_1265	PP_1266	PP_1267	PP_1268
phage	P. put South MOI 10	-0.2	-0.5	+0.0	+0.2	-5.3
phage	P. putida South MOI 10	-0.4	-1.2	+0.1	-0.5	-3.0
pH	Growth at pH9 and (C) Trisodium citrate	+0.1	-0.3	+0.3	+0.3	-5.2
phage	P. put PUT 10 MOI 10	-0.2	-0.6	-0.2	-0.1	-3.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.2	-0.2	-0.1	-3.4
carbon source	D-Glucose (C); with MOPS	-0.0	-0.3	+0.2	-0.3	-3.3
phage	P. putida Sci Big MOI 0.1	-0.2	+0.3	-0.4	-0.4	-2.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	+0.2	-0.1	-3.2
temperature shift	Temperature shift 30_to_25; with MOPS	-0.3	-0.4	+0.1	+0.3	-3.0
phage	P. putida PUT10 MOI 0.1	-0.2	-0.1	-0.0	-0.2	-2.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.3	-0.1	-0.1	-3.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.6	-0.4	-0.8	+0.2	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4	-0.8	-0.0	-0.4	-2.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	-0.6	+0.3	-0.4	-1.9
carbon source	Levulinic Acid (C)	-0.4	-0.2	-0.7	+0.1	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.2	-0.2	+0.0	-2.5
carbon source	L-Phenylalanine 5 mM (C)	+0.4	-0.6	+0.4	+0.1	-2.6
temperature shift	Temperature shift 30_to_4; with MOPS	+0.0	+0.2	-0.3	+0.2	-2.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.8	-0.2	-0.2	-1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.1	-0.1	+0.2	-2.4
carbon source	ferulate (C); with MOPS	+0.1	-0.0	+0.2	+0.2	-2.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	+0.7	-1.1	-0.3	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.4	+0.5	-0.2	-2.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	+0.5	+0.3	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.8	-0.7	-0.8	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.5	+0.2	-0.0	-2.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	+0.6	+0.2	+0.2	-1.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.6	+0.7	+0.4	-0.3	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.8	+0.7	+0.7	+0.1	-1.2
nitrogen source	Propandiamine (N)	-0.3	+0.5	-0.1	+0.0	+2.7