Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1258	PP_1259	PP_1260	PP_1261	PP_1262
carbon source	Hydroxy-L-Proline (C)	-6.9	-7.7	N.D.	-0.1	+0.1
carbon source	Hydroxy-L-Proline (C)	-7.0	-6.8	N.D.	-0.0	+0.0
pH	Growth at pH9 and (C) Trisodium citrate	-0.4	-0.2	N.D.	-1.9	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.1	N.D.	-0.8	-2.1
nitrogen source	NAG (N); with MOPS	-0.3	+0.6	N.D.	-2.4	-0.4
phage	P. putida Sci Big MOI 0.1	-0.9	+0.1	N.D.	-0.9	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.2	N.D.	-0.1	-1.8
pH	Growth at pH9 and (C) Trisodium citrate	-0.8	-0.3	N.D.	-0.8	-0.0
nitrogen source	2,6-diaminopimelic (N)	+0.0	-0.8	N.D.	-1.4	+0.2
carbon source	Trisodium citrate (C)	-0.2	+0.4	N.D.	-1.6	-0.5
carbon source	2,3-Butanediol (C)	-0.4	-0.3	N.D.	-1.0	-0.1
carbon source	butyrate (C)	-0.5	-0.1	N.D.	+0.2	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.3	N.D.	-0.3	-1.5
pH	Growth at pH8 and (C) D-Glucose	-0.5	+0.1	N.D.	-1.3	+0.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5	-0.1	N.D.	-1.4	+0.5
stress	Growth with Chloride 200 mM	+0.1	-0.4	N.D.	-0.9	+0.3
carbon source	1,3-Butandiol (C)	+0.7	-0.3	N.D.	-0.4	-0.6
carbon source	Levulinic Acid (C)	+0.1	-0.1	N.D.	+0.5	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	+0.1	N.D.	+0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.3	+0.1	N.D.	+0.6	-0.9
carbon source	butyrate (C)	+0.3	-0.3	N.D.	+0.7	-1.1
carbon source	Crotonic (C)	+0.4	-0.3	N.D.	-0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.3	N.D.	-0.6	+0.5
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.5	+0.2	N.D.	-0.5	+0.6
carbon source	Tween 20 (C)	-0.5	-0.2	N.D.	+0.9	-0.4
micoeukaryotes	C.elegans, mixed culture-1	-0.4	+0.2	N.D.	-0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.9	N.D.	-0.7	+0.1
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8	+0.2	N.D.	+0.5	+0.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.3	-0.0	N.D.	-0.6	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.3	N.D.	+1.2	+0.0