Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1235	PP_1236	PP_1237	PP_1238	PP_1239
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.4	-5.4	-1.9	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.4	-0.5	-4.3	-0.9	-0.5
phage	PUT 8 MOI 1	+0.2	-0.6	-5.1	-0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-0.1	-2.5	-2.5	-0.8
r2a control	R2A control	+0.2	+0.0	-6.0	-0.2	+0.3
carbon source	Decanoic (C)	+0.1	+0.2	-5.8	+0.1	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.5	+0.0	-3.3	-1.2	-0.6
phage	PUT8 MOI 0.1	-0.0	-0.6	-5.3	-0.1	+0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.3	+0.4	-6.0	-0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.4	+0.6	-5.3	-0.7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	-0.5	-2.5	-0.5	-1.2
pH	Growth at pH6 and (C) D-Glucose	-0.2	-0.5	-3.2	-0.2	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.4	+0.4	-5.3	-0.5	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	-4.1	-1.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.0	+0.1	-4.1	+0.4	-1.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.3	+0.3	-4.9	-0.4	-0.2
carbon source	Octanoic (C)	+0.0	-0.2	-4.5	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	-0.4	-1.9	-2.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-0.2	-4.1	-0.3	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.4	-2.6	-1.2	-0.5
phage	P. putida Sci small MOI 0.1	-0.7	-0.1	-3.9	+0.0	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.1	-2.9	-1.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.6	-3.5	-0.6	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	-0.4	-3.9	-0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5	-0.4	-3.3	+0.4	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.6	-1.0	-3.3	+0.2	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.5	-0.2	-3.6	+0.6	+0.7
pH	Growth at pH9 and (C) Trisodium citrate	+0.3	+0.6	-3.2	-0.2	+0.7
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.5	+2.2	-2.5	+0.4	-0.0
carbon source	L-Lysine 10 mM (C)	-0.4	-1.7	+3.2	+0.2	-0.5