Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_1195 and PP_1196 are separated by 48 nucleotidesPP_1196 and PP_1197 are separated by 71 nucleotidesPP_1197 and PP_1198 are separated by 200 nucleotidesPP_1198 and PP_1199 overlap by 10 nucleotides PP_1195: PP_1195 - conserved exported protein of unknown function, at 1,369,205 to 1,370,923 _1195 PP_1196: PP_1196 - conserved exported protein of unknown function, at 1,370,972 to 1,371,727 _1196 PP_1197: PP_1197 - ribosomal protein S12 methylthiotransferase, at 1,371,799 to 1,373,130 _1197 PP_1198: PP_1198 - transcriptional regulator, Cro/CI family (higA antitoxin like), at 1,373,331 to 1,373,627 _1198 PP_1199: PP_1199 - toxin-antitoxin system, higB toxin like, at 1,373,618 to 1,373,953 _1199
Group Condition PP_1195 PP_1196 PP_1197 PP_1198 PP_1199
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -0.0 +0.0 -6.7 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.3 -0.1 -6.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 +0.2 -0.2 -6.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.2 +0.0 -6.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.0 -0.2 -6.0 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -0.1 +0.0 -5.8 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 +0.0 +0.1 -4.8 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.2 -0.1 +0.1 -5.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.0 -0.1 -5.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 +0.0 +0.4 -5.5 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.2 -0.1 -5.3 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -0.2 -0.5 -5.3 +1.1
phagefrs Time6-FRS -0.0 -0.1 -0.0 -4.4 -0.0
temperature shift Temperature shift 10_to_25; with MOPS +0.0 +0.3 +0.1 -4.9 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.0 +0.0 -0.3 -4.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.1 -0.6 -3.1 -0.4
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.1 -0.1 +0.0 -4.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.1 +0.2 -0.3 -4.4 +0.4
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.1 +0.2 -0.2 -4.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.0 +0.0 -4.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 -0.0 +0.3 -4.4 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.1 -0.0 -0.1 -4.1 +0.5
nitrogen source L-Methionine (N) +0.0 +0.2 +0.2 -4.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.1 +0.2 +0.1 -4.0 +0.4
carbon source 1,4-Butanediol (C) +0.1 +0.2 +0.2 -3.7 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 -0.1 +0.4 -3.7 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 +0.2 +0.1 -3.7 +0.3
stress Growth with Chloride 500 mM; with MOPS +0.1 +0.3 +0.1 -3.4 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -0.1 +0.1 -3.4 +0.8
carbon source ferulate (C); with MOPS -0.4 +0.4 +0.8 -3.2 +0.3
remove
PP_1195
plot		 remove
PP_1196
plot		 remove
PP_1197		 remove
PP_1198
plot		 remove
PP_1199
plot