Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1189 and PP_1190 are separated by 0 nucleotidesPP_1190 and PP_1191 are separated by 49 nucleotidesPP_1191 and PP_1192 are separated by 119 nucleotidesPP_1192 and PP_1193 are separated by 261 nucleotides PP_1189: PP_1189 - conserved hypothetical protein, at 1,364,779 to 1,365,477 _1189 PP_1190: PP_1190 - conserved protein of unknown function, at 1,365,478 to 1,365,939 _1190 PP_1191: PP_1191 - S4 domain protein, at 1,365,989 to 1,366,699 _1191 PP_1192: PP_1192 - Acetyltransferase, GNAT family, at 1,366,819 to 1,367,307 _1192 PP_1193: PP_1193 - conserved membrane protein of unknown function, at 1,367,569 to 1,368,171 _1193
Group Condition PP_1189 PP_1190 PP_1191 PP_1192 PP_1193
nitrogen source NAG (N); with MOPS -0.9 -3.0 +0.2 +0.5 -0.9
carbon source ferulate (C); with MOPS -0.3 -1.0 -1.0 +0.4 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -0.1 -0.5 +0.1 -1.2
temperature shift Temperature shift 30_to_21; with MOPS -1.1 +0.9 -0.5 -0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -1.1 -0.2 +0.2 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 +0.1 -1.2 +0.1 -0.7
pH Growth at pH9 and (C) Trisodium citrate +0.1 -1.2 -0.6 +0.1 +0.8
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.4 +0.6 -0.2 -0.3 -0.9
carbon source acetate (C) -0.6 -1.0 +0.7 +0.5 +0.2
phage PUT 8 MOI 1 +0.6 +0.9 +0.2 -0.3 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 +0.9 +0.2 -0.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -0.3 +0.2 -0.0 +1.8
phage P. put PUT 10 MOI 1 +0.6 +0.9 +0.7 -0.1 -0.4
phage P. put South MOI 1 +0.7 +0.9 +0.7 +0.0 -0.6
phage PUT8 MOI 0.1 +0.8 +0.7 +0.8 -0.0 -0.4
phage P. put PUT 10 MOI 0.1 +0.6 +0.8 +0.7 +0.1 -0.2
phage P. put South MOI 1 +0.7 +1.1 +0.8 -0.3 -0.3
phage P. putida South MOI 0.1 +0.6 +1.2 +0.5 -0.5 +0.5
phage P. put PUT 10 MOI 1 +0.6 +1.3 +0.5 +0.0 -0.0
phage P. putida South MOI 10 +0.6 +1.4 +0.1 -0.0 +0.4
phage P. put PUT 10 MOI 10 +0.7 +1.0 +0.8 +0.1 -0.1
phage P. put South MOI 0.1 +0.8 +1.2 +0.7 -0.1 +0.0
phage P. putida PUT10 MOI 1 +0.8 +1.3 +0.7 -0.1 -0.1
phage P. putida PUT10 MOI 1 +0.9 +0.9 +0.7 -0.1 +0.1
phage P. putida PUT10 MOI 0.1 +0.8 +1.1 +0.9 +0.1 -0.0
phage P. putida PUT10 MOI 10 +0.9 +1.4 +0.7 +0.0 -0.1
phage P. putida South MOI 1 +1.0 +1.7 +0.5 -0.0 -0.3
phage P. putida South MOI 0.1 +0.7 +1.5 +0.6 +0.1 +0.1
phage P. putida PUT10 MOI 10 +0.5 +1.6 +0.9 +0.0 +0.0
phage P. put PUT 10 MOI 10 +1.0 +1.5 +0.7 -0.3 +0.4
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