Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1179 and PP_1180 are separated by 93 nucleotidesPP_1180 and PP_1181 are separated by 391 nucleotidesPP_1181 and PP_1182 overlap by 4 nucleotidesPP_1182 and PP_1183 are separated by 3 nucleotides PP_1179: PP_1179 - Ribonucleoside-diphosphate reductase subunit alpha, at 1,352,497 to 1,355,376 _1179 PP_1180: PP_1180 - conserved protein of unknown function, at 1,355,470 to 1,355,733 _1180 PP_1181: PP_1181 - DNA-binding response regulator, at 1,356,125 to 1,356,823 _1181 PP_1182: PP_1182 - Sensor histidine kinase, at 1,356,820 to 1,358,427 _1182 PP_1183: PP_1183 - putative Siderophore biosynthesis protein, at 1,358,431 to 1,359,132 _1183
Group Condition PP_1179 PP_1180 PP_1181 PP_1182 PP_1183
carbon source Delta-Dodecalactone (C) N.D. N.D. -2.8 -2.0 N.D.
carbon source Delta-Dodecalactone (C) N.D. N.D. -2.9 -1.6 N.D.
carbon source Tween 20 (C) N.D. N.D. -2.3 -1.4 N.D.
carbon source Tween 20 (C) N.D. N.D. -1.5 -1.4 N.D.
carbon source Delta-Undecalactone (C) N.D. N.D. -1.6 -0.5 N.D.
carbon source Delta-Undecalactone (C) N.D. N.D. -1.2 -0.3 N.D.
carbon source 3-Hydroxydecanoic (C) N.D. N.D. -0.8 -0.6 N.D.
carbon source Butyl stearate (C) N.D. N.D. -1.0 -0.2 N.D.
carbon source carbon source 4-vinylphenol 0.1 mM N.D. N.D. -1.0 -0.2 N.D.
temperature shift Temperature shift 30_to_10; with MOPS N.D. N.D. -1.2 -0.0 N.D.
carbon source Delta-Decalactone (C) N.D. N.D. -0.9 -0.2 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM N.D. N.D. -0.8 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.9 -0.1 N.D.
pH Growth at pH6 and (C) D-Glucose N.D. N.D. -0.6 -0.3 N.D.
nitrogen source nitrate (N) N.D. N.D. -0.4 -0.5 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.5 -0.3 N.D.
temperature shift Temperature shift 30_to_21; with MOPS N.D. N.D. -0.4 -0.5 N.D.
no stress control Growth with no stress N.D. N.D. -0.7 -0.1 N.D.
nitrogen source nitrite (N) N.D. N.D. -0.8 -0.0 N.D.
carbon source 3-Hydroxydecanoic (C) N.D. N.D. -0.3 -0.5 N.D.
carbon source D-Glucose (C) N.D. N.D. -0.5 -0.3 N.D.
carbon source ferulate (C); with MOPS N.D. N.D. -0.6 -0.2 N.D.
pH Growth at pH6 and (C) D-Glucose N.D. N.D. -0.4 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.7 +0.1 N.D.
temperature shift Temperature shift 30_to_21; with MOPS N.D. N.D. -0.7 +0.2 N.D.
carbon source Trisodium citrate (C) N.D. N.D. -0.7 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.5 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.6 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.3 +0.6 N.D.
phage P. putida Missley MOI 0.1 N.D. N.D. +0.7 -0.3 N.D.
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