Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_1163 and PP_1164 are separated by 108 nucleotidesPP_1164 and PP_1165 are separated by 72 nucleotidesPP_1165 and PP_1166 are separated by 24 nucleotidesPP_1166 and PP_1167 are separated by 54 nucleotides PP_1163: PP_1163 - Oxidoreductase, FAD-binding, at 1,337,285 to 1,339,321 _1163 PP_1164: PP_1164 - Transcriptional regulator, LysR family, at 1,339,430 to 1,340,326 _1164 PP_1165: PP_1165 - conserved protein of unknown function, at 1,340,399 to 1,341,268 _1165 PP_1166: PP_1166 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 1,341,293 to 1,342,216 _1166 PP_1167: PP_1167 - D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data), at 1,342,271 to 1,343,551 _1167
Group Condition PP_1163 PP_1164 PP_1165 PP_1166 PP_1167
carbon source D-Galacturonic Acid (C) +0.2 +0.0 -4.5 -0.9 -6.3
carbon source D-Galacturonic Acid (C) +0.0 +0.0 -4.7 -0.7 -6.1
carbon source D-Glucuronic gamma lactone (C) -0.0 -0.3 -1.2 -1.0 -5.5
carbon source D-Glucuronic gamma lactone (C) +0.1 -0.0 -1.2 -0.7 -5.2
carbon source acetate (C) -0.0 -3.7 -0.2 -0.8 -0.3
carbon source Trisodium citrate (C) -0.0 -3.2 +0.1 -0.0 -1.4
phage P. put South MOI 10 -0.1 -4.8 -0.2 +0.4 +0.3
carbon source Rhamnogalacturonan - from potato (C) +0.1 -0.1 -1.5 -0.3 -1.5
carbon source Rhamnogalacturonan - from potato (C) -0.2 +0.2 -1.3 -0.3 -1.7
carbon source L-Alanine (C) -0.1 -2.5 -0.2 +0.0 -0.2
carbon source D-Glucuronic Acid (C) +0.3 +0.0 -0.6 -0.0 -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.2 +0.2 -0.1 +0.1
nitrogen source nitrate (N) -0.1 -2.1 +0.1 -0.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -1.4 -0.3 -0.6 +0.0
carbon source carbon source 4-vinylphenol 0.1 mM -0.2 -1.7 -0.1 -0.3 +0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.5 -1.3 +0.1 -0.6 +0.4
temperature shift Temperature shift 30_to_21; with MOPS +0.1 -2.3 -0.2 +0.3 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -2.2 -0.0 +0.2 +0.5
nitrogen source Urea (N) +0.4 -1.7 -0.0 +0.0 -0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -0.8 +0.3 -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -1.6 +0.1 -0.4 +0.4
pH Growth at pH7 and (C) D-Glucose +0.1 -1.3 +0.1 -0.5 +0.7
pH pH 9 -0.4 -0.7 -0.2 -0.4 +0.7
stress Growth with Chloride 500 mM; with MOPS +0.1 +0.9 -0.0 -0.4 -1.0
phage P. put South MOI 1 +0.1 -1.4 +0.0 +0.4 +0.5
pH Growth at pH6 and (C) Trisodium citrate +0.0 +1.0 -0.1 -0.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -1.0 -0.1 -0.2 +0.9
stress Growth with Chloride 200 mM +0.1 +1.7 +0.1 -0.4 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.1 +1.9 -0.2 -0.2 +0.2
phage P. putida Sci small MOI 0.1 +0.4 +1.2 +0.2 +0.3 +0.7
remove
PP_1163
plot		 remove
PP_1164
plot		 remove
PP_1165		 remove
PP_1166
plot		 remove
PP_1167
plot