Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1150	PP_1151	PP_1152	PP_1153	PP_1154
stress	R2A with Fusaric 480 ug/mL	-6.9	-4.5	-5.7	-0.5	+0.0
stress	R2A with Fusaric 480 ug/mL	-6.1	-5.9	-4.0	-0.9	-0.1
stress	R2A with Fusaric 480 ug/mL	-5.3	-3.8	-6.2	+0.0	-0.0
stress	R2A with Fusaric 480 ug/mL	-3.9	-3.2	-5.1	-0.8	-0.1
stress	R2A with Fusaric 480 ug/mL	-4.3	-3.3	-4.8	-0.2	-0.1
carbon source	ferulate (C); with MOPS	-4.9	-3.8	-3.3	-0.4	-0.2
stress	R2A with Fusaric 480 ug/mL	-3.5	-3.6	-4.6	+0.0	-0.1
carbon source	ferulate (C); with MOPS	-4.4	-3.1	-4.1	-0.1	+0.1
carbon source	ferulate (C); with MOPS	-4.2	-2.5	-4.5	+0.8	+0.1
carbon source	Ferulic Acid (C)	-2.6	-2.6	-3.5	-0.0	-0.1
stress	R2A with Fusaric 240 ug/mL	-2.3	-1.7	-2.3	-0.1	-0.0
stress	R2A with Fusaric 240 ug/mL	-1.6	-1.8	-1.9	-0.1	-0.2
stress	R2A with Fusaric 240 ug/mL	-1.6	-1.8	-2.0	-0.3	+0.0
stress	R2A with Fusaric 240 ug/mL	-1.5	-1.2	-1.8	-0.8	-0.0
stress	R2A with Fusaric 240 ug/mL	-1.7	-1.1	-1.7	-0.2	-0.0
carbon source	p-Coumaric (C)	-1.1	-0.9	-0.8	+0.0	+0.1
pH	Growth at pH7 and (C) D-Glucose	-0.2	-1.1	+0.5	-1.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	+0.0	-0.3	-1.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.5	+0.3	-1.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	-0.8	+0.0	-1.1	+0.1
carbon source	D-Glucose; D-Xylose; p-Coumaric; benzoic acid (C)	-0.8	-0.4	-0.5	+0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4	+0.4	-0.2	-1.7	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.4	+0.2	-0.6	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.4	-0.9	+0.2	+0.7	+0.1
carbon source	Hexanoic (C)	+0.4	+0.6	+0.6	-0.8	-0.1
phage	P. putida Sci small MOI 0.1	+0.5	+0.5	+0.4	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.2	+1.1	+0.4
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.6	-0.3	+0.3	+1.2	+0.1
carbon source	carbon source Bisabolol 45 mM	+0.3	+0.4	+0.1	+1.0	+0.2
pH	pH 9	+0.4	+0.3	+0.2	+1.2	+0.0