Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1143	PP_1144	PP_1145	PP_1146	PP_1147
temperature shift	Temperature shift 30_to_25; with MOPS	-0.9	-0.5	-0.1	-0.2	-0.1
nitrogen source	nitrate (N)	-0.4	-0.2	-0.3	-0.3	-0.5
carbon source	Ferulic Acid (C)	-0.3	-0.1	-0.3	-0.1	-1.0
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.1	+0.0	-0.8	-0.0	-0.9
pH	Growth at pH7 and (C) D-Glucose	-1.4	+0.0	-0.2	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.0	-0.2	+0.2	-1.3
carbon source	5-Aminovaleric 10 mM (C)	+0.3	+0.1	-0.9	+0.1	-0.8
carbon source	ferulate (C); with MOPS	+0.6	-0.2	-0.2	-0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.4	-0.1	+0.1	-0.7
carbon source	L-Lysine (C)	-0.4	+0.2	-0.2	+0.2	-0.8
phage	P. put South MOI 10	-0.5	-0.0	-0.6	+0.4	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	-0.4	-0.5	+0.0	-0.6
phage	P. putida South MOI 10	-0.3	+0.2	-0.8	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.1	-0.7	-0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	+0.1	-0.5	+0.2	-0.7
carbon source	ferulate (C); with MOPS	-0.4	-0.2	+0.3	-0.6	+0.4
pH	Growth at pH8 and (C) D-Glucose	-0.4	-0.3	+0.1	-0.5	+0.5
nitrogen source	D-2-Aminobutyric (N)	-0.4	+0.1	+0.3	+0.4	-0.7
nitrogen source	NAG (N); with MOPS	+0.3	-0.1	-0.3	-1.1	+0.8
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.3	-0.1	+0.8	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.1	+0.1	+0.3	-1.0
nitrogen source	NAG (N); with MOPS	+0.5	+0.3	-0.5	-0.2	+0.6
nitrogen source	Propandiamine (N)	-0.5	+0.0	+1.0	-0.0	+0.4
pH	pH 7	-0.1	+0.4	+0.4	-0.5	+0.7
phage	PUT 8 MOI 1	+0.1	+0.2	-0.4	+0.3	+1.1
phage	P. putida PUT 7 MOI 1	+0.6	+0.2	+0.7	+0.6	-0.7
nitrogen source	2,6-diaminopimelic (N)	+0.8	+0.3	+0.1	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.1	+0.2	-0.1	+0.8
phage	P. putida Missley MOI 0.1	-0.1	+0.4	+0.6	+0.3	+0.5
phage	P. putida Sci small MOI 0.1	+1.0	+0.3	+0.5	+0.5	+0.4