Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1133 and PP_1134 are separated by 428 nucleotidesPP_1134 and PP_1135 are separated by 103 nucleotidesPP_1135 and PP_1136 are separated by 229 nucleotidesPP_1136 and PP_1137 are separated by 121 nucleotides PP_1133: PP_1133 - transposase, at 1,296,813 to 1,298,141 _1133 PP_1134: PP_1134 - conserved protein of unknown function, at 1,298,570 to 1,300,177 _1134 PP_1135: PP_1135 - conserved exported protein of unknown function, at 1,300,281 to 1,301,021 _1135 PP_1136: PP_1136 - conserved protein of unknown function, at 1,301,251 to 1,302,552 _1136 PP_1137: PP_1137 - high-affinity branched-chain amino acid transporter, ATP binding, at 1,302,674 to 1,303,375 _1137
Group Condition PP_1133 PP_1134 PP_1135 PP_1136 PP_1137
carbon source L-Leucine (C) N.D. -0.1 -0.7 +0.1 -2.0
carbon source L-Isoleucine (C) N.D. -0.0 -0.2 -0.1 -2.4
carbon source L-Isoleucine (C) N.D. -0.0 -0.3 -0.1 -2.4
carbon source L-Leucine (C) N.D. -0.1 +0.2 -0.3 -2.0
carbon source L-Leucine (C) N.D. -0.1 +0.1 +0.0 -1.8
carbon source L-Alanine (C) N.D. +0.2 +0.1 +0.0 -2.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. -0.3 -0.2 -0.0 -1.0
nitrogen source Propandiamine (N) N.D. -0.6 -0.1 -0.1 -0.7
nitrogen source L-Phenylalanine (N) N.D. +0.1 +0.0 -0.1 -1.5
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.2 -0.0 -0.0 -1.2
no stress control Growth with no stress N.D. -0.4 +0.0 +0.1 -1.2
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.1 +0.1 -0.1 -1.2
nitrogen source L-Phenylalanine (N) N.D. +0.0 +0.2 -0.1 -1.4
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.0 +0.1 +0.1 -1.2
micoeukaryotes C.elegans, mixed culture-2 N.D. -0.1 -0.8 +0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -0.3 +0.3 -0.8
carbon source DL-2-Aminoadipic 10 mM (C) N.D. +0.2 -0.4 -0.1 -0.8
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.1 +0.1 +0.2 -1.1
temperature Growth at 25C N.D. -0.1 +0.5 -0.2 -0.6
pH pH 6 N.D. -0.3 -0.3 -0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.0 -0.6 +0.3 +0.5
carbon source ferulate (C); with MOPS N.D. -0.1 -0.5 +0.2 +0.6
carbon source 2-Methylbutanoic (C) N.D. -0.2 -0.3 +0.2 +0.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. -0.1 -0.1 -0.0 +1.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. +0.0 -0.2 +0.1 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.2 +1.1 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.1 +0.2 -0.1 +1.1
phage P. putida Missley MOI 0.1 N.D. +0.4 +0.2 +0.6 +0.4
nitrogen source D-2-Aminobutyric (N) N.D. +0.3 +0.2 -0.0 +1.8
nitrogen source D-2-Aminobutyric (N) N.D. +0.1 +0.0 +0.4 +2.1
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