Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1120	PP_1121	PP_1122	PP_1123	PP_1124
nitrogen source	nitrogen source nitrite 1mM	+0.4	+0.0	-4.5	N.D.	+0.4
phage	P. putida South MOI 10	+0.1	-0.2	-2.5	N.D.	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.2	-0.0	-1.6	N.D.	-1.0
nitrogen source	Propandiamine (N)	-0.1	+0.2	-0.5	N.D.	-2.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	-0.1	-2.1	N.D.	+0.4
phage	PUT 8 MOI 1	+0.1	-0.1	-2.5	N.D.	+0.5
pH	Growth at pH8 and (C) D-Glucose	+0.1	+0.3	-2.2	N.D.	-0.1
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.1	+0.1	-1.9	N.D.	+0.2
pH	Valerolactone (C) pH 6.5	+0.0	+0.2	-0.7	N.D.	-1.4
temperature	Growth at 25C	+0.0	-0.1	-2.6	N.D.	+1.0
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.4	-0.3	N.D.	-1.1
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.0	+0.0	+0.5	N.D.	-1.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	+0.2	-1.6	N.D.	+0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.0	-0.1	-1.3	N.D.	+0.9
stress	Growth with Chloride 500 mM	+0.1	+0.2	+1.0	N.D.	-1.4
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+0.2	+0.5	-1.4	N.D.	+0.9
pH	Growth at pH7 and (C) D-Glucose	-0.0	-1.0	+1.3	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+0.4	-1.5	N.D.	+0.9
pH	pH 7	+0.2	+0.4	-1.5	N.D.	+1.3
carbon source	D-Glucose (C)	-0.2	-0.4	+1.4	N.D.	-0.3
pH	Growth at pH8 and (C) Trisodium citrate	+0.1	+0.4	+1.4	N.D.	-1.2
carbon source	ferulate (C); with MOPS	+0.4	+0.5	-1.1	N.D.	+1.0
phage	P. putida Sci small MOI 0.1	+0.2	+0.5	-1.2	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	-0.2	+1.6	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.6	-0.8	N.D.	+2.1
pH	pH 9	+0.2	-0.3	+0.4	N.D.	+1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	+1.2	N.D.	+0.9
phage	P. putida PUT 7 MOI 1	+0.4	+0.7	-0.2	N.D.	+1.1
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.2	+0.6	+0.7	N.D.	+1.1
phage	P. putida Missley MOI 0.1	+0.6	+1.1	+0.2	N.D.	+0.9